global biodiversity informatics outlook - imageclef v1 erick mata... · gbif, bhl and encyclopedia...
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Global Biodiversity Informatics Outlook: Delivering Biodiversity Knowledge in the Information Age
Erick Mata-Montero Instituto Tecnológico de CR
Global Biodiversity Informatics Outlook:Delivering Biodiversity Knowledge in the Information Age
Table of Contents
GBIOINITIATIVES
HISTORYW
HAT IS BI?INTRODUCTION
IntroductionBiodiversity conservation challenges.
What is Biodiversity Informatics?Bioinformatics, biodiversity informatics, and ecoinformatics.
Quick History of BIManual ➝ personal ➝ institucional ➝ national ➝ global.
Some Global BI InitiativesGBIF, BHL, and Encyclopedia of Life.
GBIOA roadmap for BI.
?
Introduction Biodiversity Conservation Challenges
Dimension Challenge Who?
Aesthetic Enjoy and love it Everybody
Diverse Identify and classify Taxonomists
Complex Decipher & model Biologists
Unknown Discover & associate Taxonomists
Endangered Define & implement policies Decision makers
Indispensable Use sustainably Everybody
What is Biodiversity Informatics? Bioinformatics, biodiversity informatics, and ecoinformatics?
What is Biodiversity Informatics? Bioinformatics, biodiversity informatics, and ecoinformatics?
Quick History of BIManual ➝ personal ➝ institutional ➝ national ➝ global.
Typical phases in the development of Biodiversity Information
Management Systems:
1. Manual processing
2. Personal databases
3. Institucional systems for one taxonomic group
4. Institucional systems for multiple taxonomic groups
5. Interinstitutional systems with centralized databases
6. Interinstitutional systems with distributed databases
7. Global knowledge management systems
Quick History of BIManual ➝ personal ➝ institutional ➝ national ➝ global.
Milestones:
1990: Big Bang (ERIN-Australia, INBio-Costa Rica, CONABIO-México)
1990-2000 National level initiatives
2000-2013 Global initiatives (GBIF, BHL, EOL, MapOfLife, iNaturalist)
2013-... Integration of information systems globally, nationally,
inter-institutionally
Some Global BI InitiativesGBIF, BHL and Encyclopedia of Life
GBIF• Founded in 2001.• Vision: Open and free access to
biodiversity data.• Type of information: primary data about
occurrences (specimens & observations)• # of records: 617 million• # of images: 11 million• # of audios: ~70,000• # of species: 1.6 million• # of data providers: 809• # of datasets: 29,032• www.gbif.org
Some Global BI InitiativesGBIF, BHL and Encyclopedia of Life
BHL• Founded in 2005.• Vision: Inspiring discovery through free
access to biodiversity knowledge.• Type of information: legacy literature of
biodiversity• # of pages: 50 million• # of volumes: ~186,000• www.biodiversitylibrary.org
Some Global BI InitiativesGBIF, BHL and Encyclopedia of Life
EOL• Founded in 2008.• Vision: Global access to knowledge about
life on Earth.• Type of information: species descriptions• # of records: 1.3 million• # of traits: ~11 million• # of images: ~4 million• # of collections: ~10,000• # of registered members: 88.074• # content partners: 356• # of datasets: 29,032• www.eol.org
Culture
Evidence
Data
Understanding
Focus areas
Global Biodiversity Informatics Outlook A Roadmap for BI
Culture
Evidence
Data
Understanding
Focus areas
Global Biodiversity Informatics Outlook A Roadmap for BI
Culture
Evidence
Data
Understanding
Focus areas
Providing the tools to support
consistente and comprehensiva
global discovery and use of data
from all sources about the
biodiverstity of any defined area
over time, convenirg all taxonomic
groups.
Global Biodiversity Informatics Outlook A Roadmap for BI
Culture
Evidence
Data
Understanding
Focus areas
Using the combined biodiversity
data from multiple sources to
generaste new information, and
help educarte wider society to
improve the way we manga Earth’s
resources.
Global Biodiversity Informatics Outlook A Roadmap for BI
Culture
Evidence
Data
Understanding
Focus areas
Mobilizing biodiversity data from all
sources and organizing it in forms
that can support large-scale
analysis and modelling.
Global Biodiversity Informatics Outlook A Roadmap for BI
Culture
Evidence
Data
Understanding
Focus areas
Global Biodiversity Informatics Outlook A Roadmap for BI
Culture
Evidence
Data
Understanding
Focus areas
Putting the foundations in place to
make biodiversity data an openly
shared, freely available, conected
resource.
Global Biodiversity Informatics Outlook A Roadmap for BI
Global Biodiversity Informatics Outlook A Roadmap for BI
Global Biodiversity Informatics Outlook:Delivering Biodiversity Knowledge in the Information Age
Conclusions • BI has achieved important goals at the CULTURE and DATA level. • First 15 years dominanted by developing databases, quality control,
data sharing standards development. • Large global data bases and tech developments make BI more
attractive to computer scientists: - Image/sound/video-based organismal identification (at
different taxonomic levels). - Develop larger image datasets vía crowdsourcing and
“rejuvenating” sheets from herbaria. - Find ecosistem signatures to identifyt them in satelite
images. - Visualization of taxonomies: static analysis & dynamic
analysis