genes, chips and genomes

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Speakers 28 Genes, chips and genomes The Human Genome Project is providing life science researchers with access to unprecedented amounts of raw sequence data. To effectively harness this data and apply it to biomedical research, therapeutic devel- opment, clinical practice and patient management, powerful new tools for measuring gene expression, polymorphism discovery and genotyp- ing are needed. GeneChip probe arrays are powerful tools to meet these requirements. Light-directed chemical synthesis is used to generate miniaturized, high-density arrays of oligonucleotide probes called GeneChip probe arrays. Application-specific oligonucleotide arrays have been used to rapidly scan known genes and discover genetic vari- ants, to detect the presence of known alternative alleles and to simulta- neously measure the expression of thousands of individual genes. An integrated GeneChip system including instrumentation and software has been developed for array hybridization, fluorescent detection, and data acquisition and analysis. Experiments demonstrating the effectiveness of these methods of genetic analysis will be decribed. Robert J. Lipshutz, Ph.D. Affymetrix 3380 Central Expressway Santa Clara, California 95051 USA Dr. Lipshutz received his Ph.D. from U.C. Berkeley, and his M.A. and A.B. from Harvard University, all in mathematics. Presently, he is Vice President of Corporate Development at Affymetrix, a biotechnology company developing DNA chip-based research products for the genomics and clinical diagnostic markets. Prior to this position he was Director of bioinformatics and advanced technology. The genome informatics group is responsible for DNA chip design, data analysis, instrumentation software and software product development. The advanced technology group is developing miniaturized integrated nucleic acid analysis devices under an ATP grant. His research at Affymetrix involved combinatorics, computer science, probability, statistics and com- puter modeling. © 1999 Nature America Inc. • http://genetics.nature.com © 1999 Nature America Inc. • http://genetics.nature.com

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Page 1: Genes, chips and genomes

Speakers

28

Genes, chips and genomes

The Human Genome Project is providing life science researchers withaccess to unprecedented amounts of raw sequence data. To effectivelyharness this data and apply it to biomedical research, therapeutic devel-opment, clinical practice and patient management, powerful new toolsfor measuring gene expression, polymorphism discovery and genotyp-ing are needed. GeneChip probe arrays are powerful tools to meet theserequirements. Light-directed chemical synthesis is used to generateminiaturized, high-density arrays of oligonucleotide probes calledGeneChip probe arrays. Application-specific oligonucleotide arrayshave been used to rapidly scan known genes and discover genetic vari-ants, to detect the presence of known alternative alleles and to simulta-neously measure the expression of thousands of individual genes. Anintegrated GeneChip system including instrumentation and software hasbeen developed for array hybridization, fluorescent detection, and dataacquisition and analysis. Experiments demonstrating the effectivenessof these methods of genetic analysis will be decribed.

Robert J. Lipshutz, Ph.D.

Affymetrix3380 Central ExpresswaySanta Clara, California 95051USA

Dr. Lipshutz received his Ph.D. from U.C. Berkeley, and his M.A.and A.B. from Harvard University, all in mathematics. Presently,he is Vice President of Corporate Development at Affymetrix, abiotechnology company developing DNA chip-based researchproducts for the genomics and clinical diagnostic markets. Priorto this position he was Director of bioinformatics and advancedtechnology. The genome informatics group is responsible forDNA chip design, data analysis, instrumentation software andsoftware product development. The advanced technology groupis developing miniaturized integrated nucleic acid analysisdevices under an ATP grant. His research at Affymetrix involvedcombinatorics, computer science, probability, statistics and com-puter modeling.

© 1999 Nature America Inc. • http://genetics.nature.com©

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