friend stratarx 2012-10-16
DESCRIPTION
Stephen Friend, Oct 16-17, 2012. Strata Rx Conference, San Francisco, CATRANSCRIPT
Dreaming of Tenure and IPOs while patients die: What Prevents Open Approaches to
Building Better Disease Models
THE CORRUPTION OF DENIAL
FRIEND
STRATA
TRUST HER SHE IS A DOCTOR
YET SHOULD WE?
AND I SHOULD KNOW
TRUST THE UNIVERSITIES TO HELP THE PATIENTS TO BE THE BASTIONS
OF SHARING
GARRETT FITZERALD
TRUST THE COMPANIES THE BIOTECHS THE VCs
CTCAP
AND I SHOULD KNOW
IS THERE AN ALTERNATIVE
ABCDE
“ugly duckling”
Dermoscopy
Pathology
Molecular
MD
There is no standard screening program for skin lesions; seeing an MD is self directed
Education is derived from top-down experiential knowledge
?Photos
HPI
Best accuracy of clinical diagnosis = 64% (Grin, 1990)
160k new cases/year 48k deaths in 2012 in US
Both intra- and inter- institutional data are siloed
1. activated citizens take skin pictures
2. store tons of data!
3. run algorithmic challenges in the compute space
4. give back risk-assessment & education to the citizens
virtual cycle: continuous aggregation of data enriching the model
SYNAPSE
CURATED
DATA
TOOLS/
METHODS
ANALYSES/
MODELS
RAW
DATA
BioMedicine Information Commons
Data
Generators
Data
Analysts
Experimentalists
Clinicians
Patients/
Citizens
Networked Approaches
SYNAPSE
CURATED
DATA
TOOLS/
METHODS
ANALYSES/
MODELS
RAW
DATA
BioMedical Information Commons
Data
Generators
Data
Analysts
Experimentalists
Clinicians
Patients/
Citizens
Networked Team Approaches 2
PRIVACY BARRIERS
4 REWARDS
FOR SHARING
1 USABLE
DATA
3 HOW TO
DISTRIBUTE TASKS
5 EDUCATION
BIOINFORMATICS
Sage-DREAM Breast Cancer Prognosis Challenge one month of building better disease models together
154 participants; 27 countries
334 participants; >35 countries
>500 models posted to Leaderboard
breast cancer data
Challenge Launch: July 17
Sep 26 Status
Caldos/Aparicio
IS THERE AN ALTERNATIVE
BRIDGE
IS THERE AN ALTERNATIVE
BRIDGE
PEACE
SIGN