elsevier1 vc
DESCRIPTION
Presentation given to Elsevier BV, The Netherlands in May 2010TRANSCRIPT
GLOBALBIODIVERSITYGLOBALBIODIVERSITYINFORMATIONFACILITYINFORMATIONFACILITY
WWW.GBIF.ORG
WWW.GBIF.ORG
Agenda
Agenda
Building the Biodiversity Informatics CommonsBuilding the Biodiversity Informatics Commons
Meeting with Elsevier11 May 2010, Amsterdam
AgendaAgenda
Overview of Elsevier’s Digital PublishingEmbedded technology for value addition to
scholarly publishing
GBIF OverviewWhat is GBIF & its achievementsData Publishing FrameworkGlobal Names Architecture
What’s NextActions, Responsibilities & timelines
GLOBALBIODIVERSITYGLOBALBIODIVERSITYINFORMATIONFACILITYINFORMATIONFACILITY
Dr Vishwas ChavanDr Vishwas ChavanSenior Programme Officer for Senior Programme Officer for [email protected]@gbif.org WWW.GBIF.O
RGWWW.GBIF.O
RG
GBIF & its achievements
GBIF & its achievements
Building the Biodiversity Informatics CommonsBuilding the Biodiversity Informatics Commons
Meeting with Elsevier11 May 2010, Amsterdam
GBIF: an intergovernmental initiative to share biodiversity information
GBIF: an intergovernmental initiative to share biodiversity information
Currently 54 countries; 44 International Organisations…
Growth in GBIF ParticipationGrowth in GBIF Participation
NB: Drop in Associate Participants in 2007 is attributable to delays in signing the new MOU 2007-2011
Last updated: 2010-02-12
39
51
6372
78 81 7988
97 98
GBIF’s Mandate ”To facilitate free and open access to biodiversity data worldwide, via the Internet, to underpin scientific research, conservation and sustainable development.”
GBIF is govt-initiated, and govt. funded, in response to government agency needs in biodiversity information access and management;
GBIF is in service to science, as a global ‘public good’
Data shared online via GBIF Data shared online via GBIF
(>200 m biodiversity records mapped to a 1 X 1 degree grid)
Data Publishers: 312Data Resources: 9900
GBIF facilitates access/exchange of dataGBIF facilitates access/exchange of data
GBIF-mediated data on the ‘India’
GBIF Data portal and data access/sharing/ repatriation
GBIF Data portal and data access/sharing/ repatriation
GBIF, Global Information Infrastructure for Biodiversity
GBIF, Global Information Infrastructure for Biodiversity
Global InfrastructureTools, Standards, and ProcessesStrategies and Policy
FrameworkOutreach and Capacity Building
Global Biodiversity Research
Infrastructure
Global Biodiversity Research
Infrastructure
At the core, a Discovery SystemAt the core, a Discovery System
ConsumersDataPublishers
Discovering
SearchingRetrieving
DiscoverySystem
Registering
ServicePublishers Others…
That links to resources…That links to resources…
Who? Institutions, Collections …
What?
Where?
When?
How
Data, Services, GUID/LSID…
Location, Access points…
Temporal Scope…
Formats, protocols, qualities
A distributed service ………….. which resolves to information resources
…./
Global Biodiversity Resources Discovery System (GBRDS)
Global Biodiversity Resources Discovery System (GBRDS)
Institutions/Collections LSIDs/DOI/GUIDs Standards Protocols Resources Services/Applications etc…
Key Components: the IPTKey Components: the IPT
IPTIPTIPTIPT
The Integrated Publishing Toolkit isa state-of-the-art tool to simplify the mobilization of biodiversity information resources such as Names, Metadata andprimary biodiversity data
The Integrated Publishing Toolkit isa state-of-the-art tool to simplify the mobilization of biodiversity information resources such as Names, Metadata andprimary biodiversity data
Data Publisher
Registration (GBRDS) +Publishing of Names, Metadata,Primary biodiversity data etc…
Simple process!Simple process!
The Integrated Publishing Toolkit (IPT) is designed to simplify the mapping, indexing and harvesting of Names, Metadata and Primary Biodiversity Data!
The Integrated Publishing Toolkit (IPT) is designed to simplify the mapping, indexing and harvesting of Names, Metadata and Primary Biodiversity Data!
In summary…GBIF’s InformaticsIn summary…GBIF’s Informatics
Improved accessto Names, Metadata and Primary Biodiversity Data
Distributed GBIF informatics architecture
Faster and easier publishing of data
Primary biodiversity data and information effectively available
Data and information that have been produced but are not easy to find, access, and use (i.e not effectively available!) - a gigantic task of mobilising billions of data is still needed, as well as integrating new data.
Biological collections
Scientific publications
Observations
Reports
Gray literature
Data Bases
Geography
Improving mobilisation and Cultural ChangesImproving mobilisation and Cultural Changes Broadening Data Types Data Resources Discovery Innovative Approaches to Data
Mobilisation Data Mobilisation Strategy Discussions Data Publishing Framework
Management, conservation and sustainable use of biodiversity
Policy development and decision
making (at local, national, regional, and global levels)
Scientific monitoring of status and trends of
biodiversity
GBIF-published data and analyses
The Science-Policy Interface
GLOBALBIODIVERSITYGLOBALBIODIVERSITYINFORMATIONFACILITYINFORMATIONFACILITY
Dr Vishwas ChavanDr Vishwas ChavanSenior Programme Officer for Senior Programme Officer for [email protected]@gbif.org WWW.GBIF.O
RGWWW.GBIF.O
RG
Data Publishing FrameworkPlanning & Implementation at the
National Level
Data Publishing FrameworkPlanning & Implementation at the
National Level
Building the Biodiversity Informatics CommonsBuilding the Biodiversity Informatics Commons
Meeting with Elsevier11 May 2010, Amsterdam
Chavan, August 2009
Primary Data and Scholarly PublicationsPrimary Data and Scholarly Publications
Isolated islands: Lack of interconnections
• Limits usage and impact of scholarly publications
• Barriers in proving replication and reliability of results
What is there for
me?
Recognition
Opportunities
Investment
Why should I publish data?Why should I publish data?
Data Publishing FrameworkData Publishing Framework
Cultural change towards ‘free and open access’ to biodiversity data
Addresses social, technical, and policy concerns
Answer ‘What is there for me?’ for ALL
Chavan and Ingwersen (2009) , BMC Bioinformatics, 10 (Suppl. 14): S2
DPF: Core Technical ComponentsDPF: Core Technical Components
Chavan and Ingwersen (2009) , BMC Bioinformatics, 10 (Suppl. 14): S2
Occurrence Data
Occurrence Data
KML file
Data Publication together with scholarly publication: ZooKeys
experience
Penev, et.al. (2009). ZooKeys, 11: 1-8.
PersistentIdentifiers
Journal System
SubmissionSubmission
AcceptanceAcceptance
RevisionRevision
Peer ReviewPeer Review
PublicationPublication
Registry
GBRDS
DoI
DistributedMetadata Catalogues
Metadata Authors
auto conversion to manuscriptauto conversion to manuscript
GBIF Metadata Repository
Current
Biology
PhytoKeys
Indian J. Mar. Sci.
Data Citation Mechanism & ServiceData Citation Mechanism & Service
Deep data citation mechanismRecognise ALL with their rolesMultilayer citation – producer, publisher,
aggregatorCitations within citations
Data Citation ServiceResolve citation any timeDiscover the underlined data
Under development
Data Usage Index (DUI): Why?Data Usage Index (DUI): Why?
To demonstrate to data publishers that their biodiversity efforts do have impact
Chavan, June 2009
• To encourage …– Increase of high quality data discovery and
mobilisation– Further usage of biodiversity data and information in
scientific work– Formal citation behavior in research papers of dataset– Standardisation of dataset information
DPF: ChallengesDPF: Challenges
Chavan and Ingwersen (2009) , BMC Bioinformatics, 10 (Suppl. 14): S2
Policy & Political Uptake
Cultural & Social Acceptance
Individual Researcher
Scientific and Academic Institutions
Funding and Donor Agencies
Traditional Publishing Industry
Funding Agencies
Project
Data Creation, Collection
Analysis,Interpretation
ScholarlyPublishing
Data Management,& Archival
DataPublishing
Increased Data Usage
Knowledge Dissemination
support
results in Inspires another
results in
requires
provide feedback on gaps
and strategies fo
r
leads t
o
Metadata
facilitate
facilitate
results in
Impr
oves
dat
a qu
ality
and
fitne
ss
facil
itate
enco
urag
es
Existing cycle
Complementary Expected cycleImpact Factor
Data Usage Index
DataDiscovery
Incentivisation
through Data Paper
leads to
leads to
leads to results
in
Source: BMC Bioinformatics 2009, 10(Suppl 14):S2, doi:10.1186/1471-2105-10-S14-S2
Impact of Data Publishing FrameworkImpact of Data Publishing Framework
GBIF & Elsevier: CollaborationGBIF & Elsevier: Collaboration
Data paperMetadata documents to describe data resources
Simultaneous Publishing of scholarly work and DataGBIF as an infrastructure to archive and publish
data resources associated with scholarly publication
Data Citation Mechanism & ServiceDeep data citation mechanismData citation service
Data Usage Index
Email: [email protected]
Data Publishing together with Scholarly Publishing!
Data Publishing together with Scholarly Publishing!
Metadata Catalogues HIT HIT
Data Publishers
IPT OtherPublishing Tools
Processed Indexes
Processed Indexes
Integration Services
Integration Services
Ap
plic
ati
on
sA
pp
licati
on
s
Portals
Open Journal System
Scholarly Publishing
Other Review Systems
SubmissionSubmission
AcceptanceAcceptance
RevisionRevision
Peer ReviewPeer Review
PublicationPublication
International Journal of BiodiversityData
auto conversion to manuscriptauto conversion to manuscript
Registry
GBRDS
DoI
© Vishwas Chavan, 2009