download anatomist brainvisa
TRANSCRIPT
-
8/12/2019 Download Anatomist BrainVISA
1/41/4www.brainvisa.info/download.html
BrainVISA/Anatomistdownload and
installation
DOWNLOAD
PAGE
SOURCES
REPOSITORY CHANGELOG SYSTEMS INSTALLATION DOCUMENTATION TOOLBOXES
Binary packages
Binary packages of all needed software are available here :
The BrainVISA packages contain various useful software:
BrainVISAAnatomist
Image processing and brain segmentation software developped at the SHFJ and
now at Neurospin
Supporting open-source software and libraries needed by our package
Supported systems (binary packages)
System: Version: Status and comments:
Linux/i386 Ubuntu 10.04 OK
Fedora 9 OK
Fedora 8 OK
Fedora 7 OK
Fedora Core 6 OK
Fedora Core 5 OK
Fedora Core 4 OK: 3.1 and 3.2 packages are built on this distribution.
Fedora Core
-
8/12/2019 Download Anatomist BrainVISA
2/42/4www.brainvisa.info/download.html
principle, building from sources should work but we cannot test it.
Windows Vista ? (not tested)
XP (/NT ?) OK
2000 globally OK (except a minor plugin that nobody will need)
98 and earlier not supported
If your system is not listed in the above table and you encounter problems while installing a binary package, please upgrade your system
or build from sources. We can provide binary distributions for a limited set of platforms only. Here are some known incompatibilities
and possible workarounds:
Old Linux systems: libc and some other libraries are too old and not compatible with our binary packages. Compiling might be
possible with a good compiler, but nothing is guaranteed.
OpenGL: There mightbe problems with some 3D graphics cards drivers under Linux or even Winwows. Read the FAQ for
more details.
Source packages
Alternatively you can download the source code. These sources shouldcompile on any UNIX platform with a decent C++ compiler,
including Linux, Solaris, Irix, MacOS X. Compilation is also possible on Windows platforms in the MinGW/ MSysenvironment. Then
follow the instructions on how to compile and install the source distributions.
Note:we do not provide sources for all libraries and programs. Currently we have GPL'd the code needed to build Anatomist (data
structures, IO, visualization). We provide sources for the main general algorithms, but not all algorihm parts.
Sources repository
The sources repository (subversion server) and web interface for bug tracking is accessible for open-source parts and to contributors
since august 2009. This pagedescribes how things are organized.
Installation
You need about 1.5 Gb free disk space to install the BrainVISA pack 4.1. Yes, it's big, but it contains lots of useful things.
Since 4.1 version, there's no setup step anymore. Each package is a file .tar.bz2 (or .zip for windows). You just have to uncompress
this file and the package is ready to use.
Here are the commands to uncompress the package:
On Linux and MacOS:
tar jxvf .tar.bz2
On Windows: unzip the zip file using whatever unzip tool you like (windows XP has one builtin in the system).
For older versions, a setup step is required. Each binary package is a single .tar.gz file, plus a .README file with installation
instructions (it is also provided in the tar file). The instructions here are a copy of this README file:
cd to the directory where to install the top directory of the BrainVISA package, e.g.:
cd /home/yourlogin
uncompress the archive file:
gunzip -c .tar.gz | tar xf -
On Windows, unzip the zip file using whatever unzip tool you like (windows XP has one builtin in the system).
Optionally, change the main direcory name, e.g:
mv brainvisa
run the setup script:
./brainvisa/setup.sh
-
8/12/2019 Download Anatomist BrainVISA
3/43/4www.brainvisa.info/download.html
-
8/12/2019 Download Anatomist BrainVISA
4/44/4www.brainvisa.info/download.html
Optional software
Some BrainVISA processes or modules need some external software to run. See this pagefor details.
Other modules
BrainVISA is modular, other people may add new processes for their own tools.
See the web sitefor more information.