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DNA @ 60: THE BIG DATA DECADE APRIL 14, 2003 THE HUMAN GENOME REFERENCE SEQUENCE IS “COMPLETED” ENCODE (ENCyclopedia Of DNA Elements) project to identify and catalog all functional elements in human DNA is launched by NIH’s National Human Genome Research Institute 2004 FIRST DIAGNOSTIC MICROARRAY system (from Roche) approved for clinical use 2005 NEXT-GENERATION SEQUENCING bursts onto the scene: 454 Life Sciences (now a Roche company) rolls out massively parallel pyrosequencing technology FIRST HAPLOTYPE MAP OF HUMAN GENOME (PHASE I HAPMAP) locates >1 million single nucleotide polymorphisms (SNPs) FIRST GENOME-WIDE ASSOCIATION STUDY (GWAS) PUBLISHED THE CANCER GENOME ATLAS LAUNCHED 2006 REFINED HUMAN GENOME REFERENCE PUBLISHED CANCER-RELATED MUTATIONS IDENTIFIED in coding genes of breast and colon cancers SEQUENCING BY SYNTHESIS (SBS) NEXT-GEN PLATFORM launched by Solexa, soon to be Illumina 2007 FIRST COMPLETE PERSONAL GENOME PUBLISHED is that of J. Craig Venter PHASE II HAPMAP published, characterizing over 3.1 million SNPs from 4 geographically diverse populations 2008 MOORE’S LAW GETS LICKED: Cost of sequencing a complete human genome plummets by a factor of 10 JAMES WATSON’S PERSONAL GENOME PUBLISHED, the first to be sequenced by next-generation technology SOLID LIGATION-BASED NEXT-GEN SEQUENCING introduced by Life Technologies FIRST COMPLETE CANCER GENOME PUBLISHED COMMERCIAL WHOLE-GENOME SEQUENCING OFFERED FOR $350,000 by Knome 2009 GENOME 10K PROJECT ANNOUNCED: Sequencing of 10,000 vertebrate species, roughly one per genus, to shed light on evolutionary relationships FIRST MAP OF HUMAN METHYLOME in embryonic stem cells and fibroblasts hints at roles methylation plays in differentiation and gene expression 2010 NEANDERTHAL GENOME SEQUENCED ROADMAP EPIGENOMICS PROJECT (NIH) issues first major data release, “more than 300 maps of epigenetic changes in 56 cell and tissue types. . . a significant step toward the complete epigenome” (Nature) 178 STRAINS OF THE HUMAN MICRO- BIOME have reference genomes cataloged modENCODE publishes maps of the functional regions in the genomes of C. elegans and D. melanogaster NEXT NEXT GEN—LIGHT-FREE SEQUENCING debuts in Life Technologies’ semiconductor-based Ion Torrent 2011 1000TH GWAS PUBLISHED NEXT NEXT GEN—SINGLE MOLECULE SEQUENCING: SMRT technology from Pacific Biosciences skips the amplification step to detect fluorescently labeled nucleotides as they are added to a single, long strand of DNA i5K PROJECT LAUNCHED to sequence insect and arthropod genomes 2012 THE ENCODE DATA CORNUCOPIA: 30+ open-access papers, distilled from 15 trillion bytes of raw data, reveal that more than 80 percent of the human genome is biochemically active, and a majority can be transcribed. More than 4 million apparent regulatory regions or “switches” are identified THE 1000 GENOMES PROJECT documents geographic and functional variation in the genomes of 1,092 people from 14 populations, including a haplotype map of 38 million SNPs COMMERCIAL WHOLE-GENOME SEQUENCING FOR $5,000 offered by Complete Genomics 2013. . . CELEBRATING 60 YEARS DOUBLE HELIX OF THE FEBRUARY 28, 1953 JAMES WATSON AND FRANCIS CRICK DEDUCE THE STRUCTURE OF DNA, RECOGNIZING THE POTENTIAL OF ITS DOUBLE HELICAL STRUCTURE FOR STORING GENETIC INFORMATION—THE BLUEPRINT OF LIFE COST OF SEQUENCING 1 HUMAN GENOME (Source: www.genome.gov) COMPLETED GENOMES (Archaea, Bacteria, and Eukaryotes by NCBI release date) 500 2003–2012 >2,500 total 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 400 300 200 100 0 $100M $10M $1M $100K $10K $1K Sponsored by INSIDE BINDING EDGE

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Page 1: DNA 60: THE BIG DATA DECADE · INSIDE BINDING EDGE DNA_Roll-out_Poster_Final_REV.indd 1DNA-GREG-folds.indd 1 13-03-28 11:51 AM13-03-27 5:07 PM. Created Date: 3/28/2013 11:51:15 AM

DNA@60: THE BIG DATA DECADEAPRIL 14, 2003THE HUMAN GENOME REFERENCE SEQUENCE IS “COMPLETED”

ENCODE (ENCyclopedia Of DNA Elements) project to identify and catalog all functional elements in human DNA is launched by NIH’s National Human Genome Research Institute

2004FIRST DIAGNOSTIC MICROARRAY system (from Roche) approved for clinical use

2005NEXT-GENERATION SEQUENCING bursts onto the scene: 454 Life Sciences (now a Roche company) rolls out massively parallel pyrosequencing technology

FIRST HAPLOTYPE MAP OF HUMAN GENOME (PHASE I HAPMAP) locates >1 million single nucleotide polymorphisms (SNPs)

FIRST GENOME-WIDE ASSOCIATION STUDY (GWAS) PUBLISHED

THE CANCER GENOME ATLAS LAUNCHED

2006REFINED HUMAN GENOME REFERENCE PUBLISHED

CANCER-RELATED MUTATIONS IDENTIFIED in coding genes of breast and colon cancers

SEQUENCING BY SYNTHESIS (SBS) NEXT-GEN PLATFORM launched by Solexa, soon to be Illumina

2007FIRST COMPLETE PERSONAL GENOME PUBLISHED is that of J. Craig Venter

PHASE II HAPMAP published, characterizing over 3.1 million SNPs from 4 geographically diverse populations

2008MOORE’S LAW GETS LICKED: Cost of sequencing a complete human genome plummets by a factor of 10

JAMES WATSON’S PERSONAL GENOME PUBLISHED, the fi rst to be sequenced by next-generation technology

SOLID LIGATION-BASED NEXT-GEN SEQUENCING introduced by Life Technologies

FIRST COMPLETE CANCER GENOME PUBLISHED

COMMERCIAL WHOLE-GENOME SEQUENCING OFFERED FOR $350,000by Knome

2009GENOME 10K PROJECT ANNOUNCED: Sequencing of 10,000 vertebrate species, roughly one per genus, to shed light on evolutionary relationships

FIRST MAP OF HUMAN METHYLOME in embryonic stem cells and fi broblasts hints at roles methylation plays in di� erentiation and gene expression

2010NEANDERTHAL GENOME SEQUENCED

ROADMAP EPIGENOMICS PROJECT (NIH) issues fi rst major data release, “more than 300 maps of epigenetic changes in 56 cell and tissue types. . . a signifi cant step toward the complete epigenome” (Nature)

178 STRAINS OF THE HUMAN MICRO-BIOME have reference genomes cataloged

modENCODE publishes maps of the functional regions in the genomes of C. elegans and D. melanogaster

NEXT NEXT GEN—LIGHT-FREE SEQUENCING debuts in Life Technologies’ semiconductor-based Ion Torrent

20111000TH GWAS PUBLISHED

NEXT NEXT GEN—SINGLE MOLECULE SEQUENCING: SMRT technology from Pacifi c Biosciences skips the amplifi cation step to detect fl uorescently labeled nucleotides as they are added to a single, long strand of DNA

i5K PROJECT LAUNCHED to sequence insect and arthropod genomes

2012THE ENCODE DATA CORNUCOPIA: 30+ open-access papers, distilled from 15 trillion bytes of raw data, reveal that more than 80 percent of the human genome is biochemically active, and a majority can be transcribed. More than 4 million apparent regulatory regions or “switches” are identifi ed

THE 1000 GENOMES PROJECT documents geographic and functional variation in the genomes of 1,092 people from 14 populations, including a haplotype map of 38 million SNPs

COMMERCIAL WHOLE-GENOME SEQUENCING FOR $5,000 o� ered by Complete Genomics

2013. . .

CELEBRATING

60 YEARSDOUBLE HELIXO

F TH

FEBRUARY 28, 1953JAMES WATSON AND FRANCIS CRICK DEDUCE THE STRUCTURE OF DNA, RECOGNIZING THE POTENTIAL OF ITS DOUBLE HELICAL STRUCTURE FOR STORING GENETIC INFORMATION—THE BLUEPRINT OF LIFE

COST OF SEQUENCING 1 HUMAN GENOME (Source: www.genome.gov)

COMPLETED GENOMES (Archaea, Bacteria, and Eukaryotes by NCBI release date)

500

2003–2012>2,500 total

20032004

20052006

20072008

20092010

20112012

400

300

200

100

$100M

$10M

$1M

$100K

$10K

$1K