deal with messy amr data the clever way · 2019. 6. 7. · deal with messy amr data the clever way...

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Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure.

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Page 1: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

Deal with messy AMR data the clever way

Escape disconnected workflows with a novel digital laboratory infrastructure.

Page 2: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

The research and lab software landscape

DATAWAREHOUSE

VISUALIZATION

MANUALDATA ANALYSIS

ELN

LABEQUIPMENT

DATA

AI

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Page 3: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

- New York Times

"For Big-Data Scientists, spending upwards of 80% of their time doing ‘janitor work’ is the key hurdle to insights.”

- Forbes

"76% of data scientists view data preparation as the least enjoyable part of their work.”

- Figure Eight

"79% of data scientists said they spent most of their time collecting, cleaning, and organizing data sets."

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Page 4: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

Our take on research and lab informatics

VISUALIZATION

MANUALDATA ANALYSIS

ELN

AI

LABEQUIPMENT

DATA

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Page 5: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

All types of data is captured close to the source, tagged, and stored on the platform

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Page 6: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

The grit42 platform

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DOCKING

COMPOUND

IN VITRO

IN VIVO

PHARMACO-KINETICS

SAFETY TOXINSIGHTS

BIOINFORMATICSCURVE FIT

DESCRIPTIVESTATS

= Embedded in the platform

= External integrations

Capture, manage, analyse, and visualise data across all pre-clinical drug discovery phases

Page 7: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

I wish I could spend myday copying and pasting

…said no one ever

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Page 8: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

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A workflow example

Data Import Math QC and visualisation

Analysis Save/Done

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Page 9: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The
Page 10: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

We’re combining data capture, scientific analyses, visualisations,

and logistics

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Page 11: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

Workflow example

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Page 12: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

Workflow example

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Page 13: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

But how?

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Page 14: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

The built-in advantage of defining roles and parameters

for each assay

Page 15: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

The roles of parameters

Hypothesis roles • Bacteria (subject) - gives - infection (predicate) - in - mouse (object)

Definition of roles

• Mouse (controlled) - infected with - bacteria (independent) - get’s this level of - CFU’s (dependent)

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Page 16: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

The intelligent way of searching using parameters

Page 17: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

Filter - Text

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Page 18: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

Filter - Structure

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Page 19: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

Filter - Facet/Numeric

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Page 20: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

Filter - Values

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Page 21: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

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In summary

Page 22: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

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A dynamic platform that supports your digital lab infrastructure

It’s all here. It’s all integrated. And always ready for realtime analyses.

DOCKING

COMPOUND

IN VITRO

IN VIVO

PHARMACO-KINETICS

SAFETY TOXINSIGHTS

BIOINFORMATICSCURVE FIT

DESCRIPTIVESTATS

= Embedded in the platform

= External integrations

Page 23: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

The six major advantages of grit421. Data capture, scientific analyses, visualisations, and logistics - the grit42

platform supports all your day-to-day workflows

2. Compare results across new and old datasets

3. Streamlined and replicable experiments across domains and departments

4. Perform advanced queries and faceted searches on your data

5. Perfect data structure to run advanced analyses, ie. artificial intelligence

6. All the data is inherently ready for RDF, graph analysis, FAIR, etc.

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Page 24: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

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Some of our customers

Page 25: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

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AMR-related collaborationsND4BB TRANSLOCATION

Page 26: Deal with messy AMR data the clever way · 2019. 6. 7. · Deal with messy AMR data the clever way Escape disconnected workflows with a novel digital laboratory infrastructure. The

DON’T PANIC!We offer a viable solution if you're tired of wasting your time on disconnected workflows and messy data