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Comparative Analysis of Light-Harvesting Antennae and State Transition in chlorina and cpSRP Mutants 1[OPEN] Peng Wang and Bernhard Grimm* Department of Plant Physiology, Humboldt University Berlin, 10115 Berlin, Germany ORCID ID: 0000-0002-9730-1074 (B.G.). State transitions in photosynthesis provide for the dynamic allocation of a mobile fraction of light-harvesting complex II (LHCII) to photosystem II (PSII) in state I and to photosystem I (PSI) in state II. In the state I-to-state II transition, LHCII is phosphorylated by STN7 and associates with PSI to favor absorption cross-section of PSI. Here, we used Arabidopsis (Arabidopsis thaliana) mutants with defects in chlorophyll (Chl) b biosynthesis or in the chloroplast signal recognition particle (cpSRP) machinery to study the exible formation of PS-LHC supercomplexes. Intriguingly, we found that impaired Chl b biosynthesis in chlorina1-2 (ch1-2) led to preferentially stabilized LHCI rather than LHCII, while the contents of both LHCI and LHCII were equally depressed in the cpSRP43-decient mutant (chaos). In view of recent ndings on the modied state transitions in LHCI-decient mutants (Benson et al., 2015), the ch1-2 and chaos mutants were used to assess the inuence of varying LHCI/LHCII antenna size on state transitions. Under state II conditions, LHCII-PSI supercomplexes were not formed in both ch1-2 and chaos plants. LHCII phosphorylation was drastically reduced in ch1-2, and the inactivation of STN7 correlates with the lack of state transitions. In contrast, phosphorylated LHCII in chaos was observed to be exclusively associated with PSII complexes, indicating a lack of mobile LHCII in chaos. Thus, the comparative analysis of ch1-2 and chaos mutants provides new evidence for the exible organization of LHCs and enhances our understanding of the reversible allocation of LHCII to the two photosystems. In oxygenic photosynthesis, PSII and PSI function in series to convert light energy into the chemical energy that fuels multiple metabolic processes. Most of this light energy is captured by the chlorophyll (Chl) and carotenoid pigments in the light-harvesting antenna complexes (LHCs) that are peripherally associated with the core complexes of both photosystems (Wobbe et al., 2016). However, since the two photosystems exhibit different absorption spectra (Nelson and Yocum, 2006; Nield and Barber, 2006; Qin et al., 2015), PSI or PSII is preferentially excited under naturally uctuating light intensities and qualities. To optimize photosynthetic electron transfer, the excitation state of the two photo- systems must be rebalanced in response to changes in lighting conditions. To achieve this, higher plants and green algae require rapid and precise acclimatory mechanisms to adjust the relative absorption cross- sections of the two photosystems. To date, the phenomenon of state transitions is one of the well-documented short-term acclimatory mechanisms. It allows a mobile portion of the light-harvesting antenna complex II (LHCII) to be allocated to either photosystem, depending on the spectral composition and intensity of the ambient light (Allen and Forsberg, 2001; Rochaix, 2011; Goldschmidt-Clermont and Bassi, 2015; Gollan et al., 2015). State transitions are driven by the redox state of the plastoquinone (PQ) pool (Vener et al., 1997; Zito et al., 1999). When PSI is preferentially excited (by far-red light), the PQ pool is oxidized and all the LHCII is associated with PSII. This allocation of antenna complexes is dened as state I. When light conditions (blue/red light or low light) favor exciton trapping of PSII, the transition from state I to state II occurs. The over-reduced PQ pool triggers the activation of the membrane-localized Ser-Thr kinase STN7, which phosphorylates an N-terminal Thr on each of two major LHCII proteins, LHCB1 and LHCB2 (Allen, 1992; Bellaore et al., 2005; Shapiguzov et al., 2016). Phosphorylation of LHCII results in the dissociation of LHCII from PSII and triggers its reversible relocation to PSI (Allen, 1992; Rochaix, 2011). Conversely, when the PQ pool is reoxidized, STN7 is inactivated and the constitu- tively active, thylakoid-associated phosphatase TAP38/ PPH1 dephosphorylates LHCII, which then reassociates with PSII (Pribil et al., 2010; Shapiguzov et al., 2010). The physiological signicance of state transitions has been demonstrated by the reduction in growth rate seen in the stn7 knock-out mutant under uctuating light conditions (Bellaore et al., 2005; Tikkanen et al., 2010). The canonical state transitions model implies spatial and temporal regulation of the allocation of LHC between the two spatially segregated photosystems (Dekker and Boekema, 2005). PSII-LHCII supercomplexes are orga- nized in a tightly packed form in the stacked grana 1 This work was supported by the Alexander von Humboldt Foun- dation (P.W.) and by the Deutsche Forschungsgemeinschaft FOR2092 (grant no. GR 936/18-1 to B.G.). * Address correspondence to [email protected]. The author responsible for distribution of materials integral to the ndings presented in this article in accordance with the policy de- scribed in the Instructions for Authors (www.plantphysiol.org) is: Bernhard Grimm ([email protected]). P.W. and B.G. designed the research; P.W. performed the experi- ments; P.W. and B.G. analyzed the data and wrote the article. [OPEN] Articles can be viewed without a subscription. www.plantphysiol.org/cgi/doi/10.1104/pp.16.01009 Plant Physiology Ò , November 2016, Vol. 172, pp. 15191531, www.plantphysiol.org Ó 2016 American Society of Plant Biologists. All Rights Reserved. 1519 www.plantphysiol.org on February 10, 2019 - Published by Downloaded from Copyright © 2016 American Society of Plant Biologists. All rights reserved.

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Comparative Analysis of Light-Harvesting Antennae andState Transition in chlorina and cpSRP Mutants1[OPEN]

Peng Wang and Bernhard Grimm*

Department of Plant Physiology, Humboldt University Berlin, 10115 Berlin, Germany

ORCID ID: 0000-0002-9730-1074 (B.G.).

State transitions in photosynthesis provide for the dynamic allocation of a mobile fraction of light-harvesting complex II (LHCII)to photosystem II (PSII) in state I and to photosystem I (PSI) in state II. In the state I-to-state II transition, LHCII isphosphorylated by STN7 and associates with PSI to favor absorption cross-section of PSI. Here, we used Arabidopsis(Arabidopsis thaliana) mutants with defects in chlorophyll (Chl) b biosynthesis or in the chloroplast signal recognition particle(cpSRP) machinery to study the flexible formation of PS-LHC supercomplexes. Intriguingly, we found that impaired Chl bbiosynthesis in chlorina1-2 (ch1-2) led to preferentially stabilized LHCI rather than LHCII, while the contents of both LHCI andLHCII were equally depressed in the cpSRP43-deficient mutant (chaos). In view of recent findings on the modified state transitions inLHCI-deficient mutants (Benson et al., 2015), the ch1-2 and chaos mutants were used to assess the influence of varying LHCI/LHCIIantenna size on state transitions. Under state II conditions, LHCII-PSI supercomplexes were not formed in both ch1-2 and chaosplants. LHCII phosphorylation was drastically reduced in ch1-2, and the inactivation of STN7 correlates with the lack of statetransitions. In contrast, phosphorylated LHCII in chaos was observed to be exclusively associated with PSII complexes, indicatinga lack of mobile LHCII in chaos. Thus, the comparative analysis of ch1-2 and chaos mutants provides new evidence for the flexibleorganization of LHCs and enhances our understanding of the reversible allocation of LHCII to the two photosystems.

In oxygenic photosynthesis, PSII and PSI function inseries to convert light energy into the chemical energythat fuels multiple metabolic processes. Most of thislight energy is captured by the chlorophyll (Chl) andcarotenoid pigments in the light-harvesting antennacomplexes (LHCs) that are peripherally associated withthe core complexes of both photosystems (Wobbe et al.,2016). However, since the two photosystems exhibitdifferent absorption spectra (Nelson and Yocum, 2006;Nield and Barber, 2006; Qin et al., 2015), PSI or PSII ispreferentially excited under naturally fluctuating lightintensities and qualities. To optimize photosyntheticelectron transfer, the excitation state of the two photo-systems must be rebalanced in response to changes inlighting conditions. To achieve this, higher plants andgreen algae require rapid and precise acclimatorymechanisms to adjust the relative absorption cross-sections of the two photosystems.

To date, the phenomenon of state transitions is one ofthewell-documented short-termacclimatorymechanisms.

It allows a mobile portion of the light-harvesting antennacomplex II (LHCII) to be allocated to either photosystem,dependingon the spectral composition and intensity of theambient light (Allen and Forsberg, 2001; Rochaix, 2011;Goldschmidt-Clermont and Bassi, 2015; Gollan et al.,2015). State transitions are driven by the redox state of theplastoquinone (PQ) pool (Vener et al., 1997; Zito et al.,1999). When PSI is preferentially excited (by far-red light),the PQ pool is oxidized and all the LHCII is associatedwith PSII. This allocation of antenna complexes is definedas state I. When light conditions (blue/red light or lowlight) favor exciton trapping of PSII, the transition fromstate I to state II occurs. The over-reduced PQpool triggersthe activation of the membrane-localized Ser-Thr kinaseSTN7,which phosphorylates anN-terminal Thr on each oftwo major LHCII proteins, LHCB1 and LHCB2 (Allen,1992; Bellafiore et al., 2005; Shapiguzov et al., 2016).Phosphorylation of LHCII results in the dissociation ofLHCII from PSII and triggers its reversible relocation toPSI (Allen, 1992; Rochaix, 2011). Conversely, when the PQpool is reoxidized, STN7 is inactivated and the constitu-tively active, thylakoid-associated phosphatase TAP38/PPH1 dephosphorylates LHCII, which then reassociateswith PSII (Pribil et al., 2010; Shapiguzov et al., 2010). Thephysiological significance of state transitions has beendemonstrated by the reduction in growth rate seen in thestn7 knock-out mutant under fluctuating light conditions(Bellafiore et al., 2005; Tikkanen et al., 2010).

The canonical state transitions model implies spatialand temporal regulation of the allocation of LHCbetweenthe two spatially segregated photosystems (Dekker andBoekema, 2005). PSII-LHCII supercomplexes are orga-nized in a tightly packed form in the stacked grana

1 This workwas supported by the Alexander vonHumboldt Foun-dation (P.W.) and by the Deutsche Forschungsgemeinschaft FOR2092(grant no. GR 936/18-1 to B.G.).

* Address correspondence to [email protected] author responsible for distribution of materials integral to the

findings presented in this article in accordance with the policy de-scribed in the Instructions for Authors (www.plantphysiol.org) is:Bernhard Grimm ([email protected]).

P.W. and B.G. designed the research; P.W. performed the experi-ments; P.W. and B.G. analyzed the data and wrote the article.

[OPEN] Articles can be viewed without a subscription.www.plantphysiol.org/cgi/doi/10.1104/pp.16.01009

Plant Physiology�, November 2016, Vol. 172, pp. 1519–1531, www.plantphysiol.org � 2016 American Society of Plant Biologists. All Rights Reserved. 1519 www.plantphysiol.orgon February 10, 2019 - Published by Downloaded from

Copyright © 2016 American Society of Plant Biologists. All rights reserved.

regions of thylakoid membranes, while PSI-LHCI super-complexes are mainly localized in the nonstacked stro-mal lamellae and grana margin regions (Dekker andBoekema, 2005; Haferkamp et al., 2010). It has been pro-posed that, in the grana margin regions, which harborLHCII and both photosystems, LHCII can migrate rap-idly between them (Albertsson et al., 1990; Albertsson,2001). This idea is supported by the recent discovery ofmega complexes containing both photosystems in thegrana margin regions (Yokono et al., 2015). Furthermore,phosphorylation of LHCII was found to increase not onlythe amount of PSI found in the grana margin region ofthylakoid membranes (Tikkanen et al., 2008a), but also tomodulate the pattern of PSI-PSII megacomplexes underchanging light conditions (Suorsa et al., 2015). Nonethe-less, open questions remain in relation to the physiolog-ical significance of the detection of phosphorylated LHCIIin all thylakoid regions, even under the constant lightconditions (Grieco et al., 2012; Leoni et al., 2013; Wientjeset al., 2013), although LHCII phosphorylation has beenshown to modify the stacking of thylakoid membranes(Chuartzman et al., 2008; Pietrzykowska et al., 2014).

State I-to-state II transition is featured by the forma-tion of LHCII-PSI-LHCI supercomplexes, in whichLHCII favors the light-harvesting capacity of PSI. Re-cently, LHCII-PSI-LHCI supercomplexes have beensuccessfully isolated and purified using various deter-gents (Galka et al., 2012; Drop et al., 2014; Crepin andCaffarri, 2015) or a styrene-maleic acid copolymer (Bellet al., 2015). These findings yielded further insights intothe reorganization of supercomplexes associated withstate transitions, and it was suggested that phospho-rylation of LHCB2 rather than LHCB1 is the essentialtrigger for the formation of state transition super-complexes (Leoni et al., 2013; Pietrzykowska et al.,2014; Crepin and Caffarri, 2015; Longoni et al., 2015).Furthermore, characterization of mutants deficient inindividual PSI core subunits indicates that PsaH, L, andI are required for docking of LHCII at PSI (Lunde et al.,2000; Zhang and Scheller, 2004; Kouril et al., 2005;Plöchinger et al., 2016).

Recently, the state transition capacity has beencharacterized in the Arabidopsis (Arabidopsis thaliana)mutants with missing LHCI components. Although theArabidopsis knock-out mutants lacking one of the fourLHCI proteins (LHCA1-4) showed enhanced accumu-lation of LHCII-PSI complexes, the absorption cross-section of PSI under state II conditions was stillcompromised in the lhca1-4mutants, and it is suggestedthat LHCI mediates the detergent-sensitive interactionbetween ‘extra LHCII’ and PSI (Benson et al., 2015;Grieco et al., 2015). Furthermore, the Arabidopsis mu-tant DLhca lacking all LHCA1-4 proteins was shown tobe compensated for the deficiency of LHCI by bindingLHCII under state II conditions (Bressan et al., 2016). Inspite of this finding, the significant reduction in theabsorption cross-section of PSI was still observed in theDLhca mutant, suggesting a substantial role of LHCIin light absorption under canopy conditions (Bressanet al., 2016). However, these findings emphasize the

acclimatory function of state transitions in balancinglight absorption capacity between the two photosys-tems bymodifying their relative antenna size and implythe dynamic and variable organization of PS-LHCsupercomplexes.

LHC proteins are encoded by the nuclear Lhc super-family (Jansson, 1994). The biogenesis of LHCs includesthe cytoplasmic synthesis of the LHC precursor pro-teins, their translocation into chloroplasts via the TOC/TIC complex, and their posttranslational targeting andintegration into the thylakoid membranes by meansof the chloroplast signal recognition particle (cpSRP)machinery (Jarvis and Lopez-Juez, 2013). The post-translational cpSRP-dependent pathway for the finaltranslocation of LHC proteins into the thylakoidmembrane includes interaction of cpSRP43 with LHCapo-proteins and recruitment of cpSRP54 to form atransit complex. Then binding of this tripartite cpSRPtransit complex to the SRP receptor cpFtsY follows,which supports docking of the transit complex to thy-lakoid membranes and its association with the LHCtranslocase ALB3. Ultimately, ALB3 inserts LHC apo-proteins into the thylakoid membrane (Richter et al.,2010). Importantly, stoichiometric amounts of newlysynthesized Chl a and Chl b as well as carotenoid areinserted into the LHC apo-proteins by unknownmechanisms to form the functional LHCs that associatewith the core complexes of both photosystems in thethylakoid membranes (Dall’Osto et al., 2015; Wang andGrimm, 2015).

The first committed steps in Chl synthesis occur inthe Mg branch of the tetrapyrrole biosynthesis path-way. 5-Aminolevulinic acid synthesis provides theprecursor for the formation of protoporphyrin IX,which is directed into the Mg branch (Tanaka andTanaka, 2007; Brzezowski et al., 2015). Chl synthesisends with the conversion of Chl a to Chl b catalyzed byChl a oxygenase (CAO; Tanaka et al., 1998; Tomitaniet al., 1999). It has been hypothesized that coordinationbetween Chl synthesis and the posttranslational cpSRPpathway is a prerequisite for the efficient integration ofChls into LHC apo-proteins.

In this study, we intend to characterize the assemblyof LHCs when the availability of Chl molecules or theintegration of LHC apo-proteins into thylakoid mem-branes is limiting. To this end, we compared the as-sembly of LHCs and the organization of PS-LHCcomplexes in two different sets of Arabidopsis mutants.Firstly, we used the chlorina1-2 (ch1-2) mutant, which isdefective in the CAO gene. The members of the secondset of mutants carry knock-out mutations in genes in-volved in the chloroplast SRP pathway (Richter et al.,2010).

Our studies revealed distinct accumulation ofPS-LHC supercomplexes between the two sets of mu-tant relative to wild-type plants. In spite of the defect insynthesis of Chl b, ch1-2 retains predominantly intactPSI-LHCI supercomplexes but has strongly reducedamounts of LHCII. In contrast, the chaos (cpSRP43)mutant exhibits synchronously reduced contents of

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both LHCI and LHCII, which results in the accumula-tion of PS core complexes without accompanyingLHCs. Thus, the distribution of LHCs in the thylakoidmembranes of the two mutants, ch1-2 and chaos, wereexplored under varying light conditions with the aim ofelucidating the influence of modified LHCI/LHCIIantenna size on state transitions. Our results contributeto an expanding view on the variety of photosyntheticcomplexes, which can be observed in Arabidopsisplants with specified mutations in LHC biogenesis.

RESULTS

Reduced Contents of LHCs in ch1-2 and cpsrp Mutants

To examine the prerequisites for the precise reallo-cation of LHCII in response to an imbalance in thedistribution of absorbed light energy between PSII andPSI, we examined mutants that are impaired in Chl bbiosynthesis or in the cpSRP machinery. These mutantsenable comparative studies on LHC accumulationduring state transitions when the availability of eitherChl b or LHC apo-proteins is limiting (Fig. 1A).Three allelic Arabidopsis cao mutants have been

reported and termed chlorina1-1, 1-2, and 1-3 (ch1-1, ch1-2,and ch1-3). They either accumulate reduced amounts ofChl b or fail to synthesize it altogether and in turn showsignificantly reduced levels of LHCproteins (Murray andKohorn, 1991; Espineda et al., 1999; Havaux et al., 2007;Kim et al., 2009; Takabayashi et al., 2011). ch1-1 and ch1-3entirely lack Chl b due to a CAO null mutation (Murray

and Kohorn, 1991; Espineda et al., 1999; Havaux et al.,2007; Kim et al., 2009; Takabayashi et al., 2011). In ch1-2,Chl b synthesis is compromised, and the CAO proteincontains a V274E point mutation within its Rieske-binding domain (Espineda et al., 1999). In agreementwith previous reports, the ch1-2mutant accumulated onlyabout 20% as much Chl b as the wild-type plants. As aresult, the Chl a/b ratio in ch1-2 rises to about 9.55 (Fig. 1B).

Plants bearing knockout mutations in the nucleargenes encoding cpSRP43 (chaos; Amin et al., 1999;Klimyuk et al., 1999), cpSRP54 (ffc; Pilgrim et al., 1998;Amin et al., 1999), both cpSRP43 and cpSRP54 (chaos/ffc;Hutin et al., 2002), or cpFtsY (cpftsy; Tzvetkova-Chevolleauet al., 2007) always exhibited a pale-green leaf pheno-type (Fig. 1A) and contained reduced Chl levels (Fig.1B). In contrast, the alb3mutant, which lacks the LHCtranslocase, shows an albino phenotype (Sundberget al., 1997). Interestingly, in addition to chaos and ffcmutants, an additive effect on delayed plant growthand reduced Chl contents was found in chaos/ffcmutant (Fig. 1, A and B), highlighting the role ofcpSRP43-cpSRP54 heterodimer in targeting of LHCproteins to thylakoid membranes. Moreover, the stron-gest pale-green phenotype and the most retarded plantgrowth were observed in the cpftsymutants among thecpsrp mutants analyzed here (Fig. 1, A and B), indicat-ing the indispensable function of cpFtsY in the cpSRPpathway.

In the mutants analyzed here, the LHC contents wereexamined by immunoblotting with antibodies raisedagainst LHCA1 and LHCB1, as representative subunits

Figure 1. Characterization of Arabidopsis mutants with defects in Chl b biosynthesis and chloroplast SRP machinery. A, Rep-resentative photograph of an 18-d-old ch1-2 mutant and cpsrp mutants including chaos (cpsrp43), ffc (cpsrp54), the chaos/ffc(cpsrp43/cpsrp54) double mutant, and the cpftsy mutant and their corresponding wild-type progenitor plants (Ler-0 for chaos,Col-0 for all the others). Bar = 5mm. B, Relative Chl contents and Chl a/b ratios in the above plants. The total Chl a + b levels in thewild-type plants were set to 100%. The data represent means 6 SD of three biological replicates. C, Steady-state levels of LHCsubunits (LCHA1 for LHCI and LHCB1 for LHCII) and the ATPase b-subunit in the thylakoid membranes from the above plantswere analyzed by immunoblotting. An equivalent of 1.5 mg of Chl was loaded on the 12% SDS-urea-PA gel. Equality of loadingwas monitored by the level of the ATPase b-subunit and by Ponceau red staining (Ponceau S). Three biological replicates wereperformed, and similar results were obtained.

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of LHCI and LHCII, respectively. As shown before(Espineda et al., 1999), LHCB1 was strongly reduced inch1-2 (Fig. 1C), while the LHCA1 content was unex-pectedly slightly diminished (Fig. 1C). In contrast toch1-2 mutant, the cpsrp mutants contained severely re-duced contents of the LHCPs of both photosystems.Combining previous detailed descriptions of the effectsof cpsrpmutations on levels of various LHCI and LHCIIsubunits (Pilgrim et al., 1998; Espineda et al., 1999;Hutin et al., 2002; Tzvetkova-Chevolleau et al., 2007;Ouyang et al., 2011), we concluded that, in each of thethree cpsrpmutants studied here, steady-state amountsof LHCI and LHCII proteins are equally affected (Fig.1C). Interestingly, levels of LHC proteins were clearlyhigher in ffc than in chaos, chaos/ffc, and cpftsy (Fig. 1C),indicating that cpSRP43 functions predominantly andindependently from cpSRP54 in targeting of LHC pro-teins to the thylakoidmembranes (Tzvetkova-Chevolleauet al., 2007; Liang et al., 2016). In summary, our initialresults suggest that malfunction of the cpSRP pathwaydepresses steady-state levels of both LHCI and LHCII,while strongly reduced Chl b biosynthesis preferentiallyaffects LHCII.

Accumulation of Photosynthetic Apparatus in ch1-2 andcpsrp Mutants

The diminished LHC contents observed in ch1-2 andcpsrp mutants enabled us to examine the consequencesof each mutation for the assembly of PS-LHC com-plexes in the thylakoid membranes. For this pur-pose, the isolated thylakoid membranes were treatedwith the nonionic detergent n-dodecyl-b-D-maltoside(b-DM) to efficiently solubilize both grana and non-stacked regions (Jarvi et al., 2011; Grieco et al., 2015).The thylakoid membranes were then fractionated bylarge-pore Blue-Native polyacrylamide gel electropho-resis (lpBN-PAGE) (Jarvi et al., 2011) followed by SDS-PAGE in the second dimension to determine the proteincomposition of each of the various photosyntheticcomplexes.

In the thylakoid membranes, LHCII is peripherallyassociated with PSII to form a PSII-LHCII super-complex, which is mainly localized in the grana coreregions (Dekker and Boekema, 2005). Depending on thebinding strength of LHCII to PSII, four variants of PSII-LHCII supercomplexes (II) were observed on thelpBN-PA gel (Fig. 2, A and B). Apart from the PSII-LHCII supercomplexes, several PSII subcomplexes, in-cluding the PSII dimer (III), PSII monomer (V), LHCIIassembly complex (VI), trimeric and monomeric LHCII(VII and VIII) could be detected (Fig. 2, A and B), whichis consistent with previous reports (Jarvi et al., 2011).The ch1-2, ffc, and chaos mutants were characterized byreduced amounts of the PSII-LHCII supercomplexesand LHCII trimers, which are in turn associated withelevated levels of the PSII monomer and LHCII as-sembly complex (Fig. 2, A and B). The chaos/ffc andcpftsymutants showed a more severe reduction in PSII-LHCII supercomplexes and PSII dimers (Fig. 2, A and

B), suggesting that simultaneous loss of cpSRP43 andcpSRP54 or deficiency of the cpFtsY receptor affects notonly the stability of antenna proteins but also the as-sembly of the PSII core complex in the thylakoidmembranes. This observation is supported by the ear-lier finding that cpSRP54 and cpFtsY cooperate in thecotranslational integration of plastid-encoded PSII coresubunits (Richter et al., 2010).

In contrast to the various PSII-LHCII supercomplexesseen in wild-type plants, only a single PSI-LHCIsupercomplex (III) was observed in control plants,whichmigrates close to PSII dimers on lpBN-PA gels. Inmutants defective in LHCI formation, only PSI corecomplexes are observed (Havaux et al., 2007; Wientjeset al., 2009; Takabayashi et al., 2011; Benson et al., 2015).A dominant band of PSI core complexes was observedin the chaos mutant (Fig. 2, A and B), confirming re-duced accumulation of LHCI subunits in chaos relativeto ch1-2 (Fig. 1C). In addition to drastically disruptedassembly and/or reduced stability of PSII-LHCIIsupercomplexes and PSII dimers in chaos/ffc and cpftsymutants, accumulation of both PSI-LHCI and PSI corecomplexes was strongly impaired (Fig. 2, A and B). Incontrast to these observations, the slight reductions inLHCI proteins seen in ch1-2 and ffc are consistent with aminor perturbation of PSI-LHCI supercomplex forma-tion (Fig. 2, A and B).

In summary, based on the accumulation of PS-LHCcomplexes in the thylakoid membranes, ch1-2 and thedifferent cpsrp mutants can be classified into threegroups: (1) ch1-2 exhibited a drastically reduced contentof LHCII and only a slightly impaired LHCI content; (2)chaos and ffc were both characterized by impaired ac-cumulation of both LHCI and LHCII, with levels ofboth complexes being more severely affected in thechaos mutant than in ffc; and (3) the chaos/ffc and cpftsymutants showed the greatest reductions in LHC con-tent, and accumulated photosystem core complexes.

Impaired State Transitions in ch1-2 and cpsrp Mutants

Short-term state transitions enable the reversible al-location of LHCII to PSI when PSII rather than PSI ispreferentially activated (Allen and Forsberg, 2001;Rochaix, 2011; Goldschmidt-Clermont and Bassi, 2015;Gollan et al., 2015). The observations that ch1-2 andchaos mutants exhibited distinct accumulation of PSI-LHCI complexes (Figs. 1 and 2) led to further explora-tion of the association of LHCII with PSI or PSII duringstate transitions. It was recently shown that an intactLHCI complex is required for a complete state I-to-stateII transition (Benson et al., 2015). To explore thesefindings further, we compared state transitions in ch1-2and chaoswith control seedlings. We hypothesized thatthe defects in formation of PSI-LHCI supercomplexesobserved in chaos would lead to an aberrant transitionrelative to ch1-2 and control plants under state II con-ditions (Figs. 1 and 2). As additional controls, we ex-amined the ffc mutant, in which levels of both LHCswere only slightly reduced, and the stn7/8 double

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mutant. The latter mutant is unable to phosphorylateLHCII proteins and PSII core subunits and thus failsto undergo state transitions during changes in lightquality.Light-dependent state transitions were marked by

the allocation of LHCII to PSII in state I and its partialtransfer to PSI in state II. Thus, modification of the an-tenna sizes (i.e. absorption cross-sections) of the pho-tosystems, as determined by 77K fluorescence emission,reflected the capacity to undergo state transitions(Bellafiore et al., 2005; Tikkanen et al., 2008a). In wild-

type plants, the transition from state I (induced by ex-posure to far-red light) to state II (upon exposure to redlight) was accompanied by an obvious relative increasein PSI fluorescence emission at 733 nm, indicating theredistribution of excitation energy from PSII to PSI (Fig.3). Although a slightly reduced content of LHCs wasobserved in the ffcmutant (Figs. 1 and 2), the PSI peak inffc showed a greater enhancement under state II con-ditions than that in wild-type plants (Fig. 3). In contrast,the PSI fluorescence of ch1-2, chaos, and stn7/8 mutantsshowed no obvious increase under state II conditions

Figure 2. Analyses of thylakoid mem-brane pigment-protein complexes. A,Equal amounts of thylakoid mem-branes (8 mg of Chl) from wild-typeplants (Col-0 and Ler-0), ch1-2 andcpsrp mutant plants were solubilizedwith 1% (w/v) DM and first separatedby lpBN-PAGE. B, Individual lanesfrom the lpBN-PAGE gel in Awere thensubjected to SDS-urea-PAGE in thesecond dimension. Total proteins werevisualized by staining with CoomassieBrilliant Blue. Identities of the relevantproteins are indicated by arrows. Themajor PSI proteins, PsaA/B, as well asminor proteins are circled. Two bio-logical replicates were performed, andsimilar results were obtained.

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(Fig. 3), implying that the state I-to-state II transition isblocked not only in stn7/8 but also in ch1-2 and chaos.The spectral response of the photosynthetic complexesin the thylakoids of chaoswas consistent with a previousreport (Pesaresi et al., 2009). Furthermore, it is worthnoting that the PSII and PSI fluorescence peaks in ch1-2differed bymore than 2-fold (Fig. 3). This observation isexplained by strongly impaired assembly of LHCIIrelative to the LHCI content at PSI in ch1-2 as a result ofits deficiency in Chl synthesis. Apparently, LHCII as-sembly is far more susceptible to perturbation of Chlsynthesis than formation of LHCI (Figs. 1 and 2).

Next, the formation of the LHCII-PSI-LHCI super-complexes under state II conditions was 2D lpBN-SDS-PAGE. To keep the LHCII-PSI-LHCI supercomplexesintact, the mild nonionic detergent digitonin was usedinstead of b-DM to specifically solubilize the nonap-pressed grana margins and stromal lamellae of thyla-koid membranes (Järvi et al., 2011; Grieco et al., 2015).As expected, when plants were exposed to red light(state II), LHCII-PSI-LHCI supercomplexes wereformed (Figs. 4), which raised the photochemical workrate of PSI (Galka et al., 2012). In agreement with 77K

fluorescence emission spectra analysis (Fig. 3), LHCII-PSI-LHCI supercomplexes were observed only in wild-type plants and, to a lesser degree, in ffc under state IIconditions (Fig. 4, A and B). In contrast, stn7/8, ch1-2,and chaos lacked these supercomplexes (Fig. 4, A and B).As shown in Figure 2, a stable PSI-LHCI complex wasobserved in ch1-2, while chaos accumulated PSI corecomplexes lacking LHCI (Fig. 4, A and B). Both ch1-2and chaos mutants exhibited diminished levels of theLHCII trimer (Fig. 4, A and B). Nevertheless, mega-complexes containing PSI-LHCI and/or PSII-LHCIIsupercomplexes were still observed in all of the mu-tants analyzed under state II light (Fig. 4, A and B).Altogether, these results indicate ch1-2 and chaos mu-tants failed to perform state transitions and did notform LHCII-PSI-LHCI supercomplexes under state IIconditions.

Phosphorylation of LHCII in ch1-2 and cpsrp Mutants

Phosphorylation of LHCII is reported to be a pre-requisite for the state I-to-state II transition (Allen, 1992;Rochaix, 2011). The phosphorylation state of LHCII

Figure 3. Analysis of state transitionsby low-temperature (77K) fluorescenceemission spectroscopy. Fluorescenceemission spectra of thylakoid mem-branes were recorded at 77˚K after ex-posure of wild-type plants (Col-0 andLer-0) and the stn7/8, ch1-2, ffc, chaosmutants to lighting conditions that favoreither state I (black lines, far-red light of730 nm) or state II (gray lines, red lightof 660 nm). The excitation wavelengthwas 475 nm, and spectra were nor-malized with reference to peak heightat 685 nm. Three biological replicateswere performed, and similar resultswere obtained.

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(P-LHCII), as well as of PSII core subunits (P-D1, P-D2,and P-CP43), was analyzed on a phospho-Thr immu-noblot (Anti-P-Thr) when plants were acclimated tostate I or state II light conditions. Both wild-type plantsand the ffc mutant showed increased phosphorylationof LHCII and PSII core subunits in state II conditions,while P-LHCII and phosphorylated PSII core subunitswere absent in both ch1-2 and stn7/8 mutants (Fig. 5A),implying that the kinases STN7 and STN8 are not ac-tivated in the ch1-2 mutant. Thus, it is suggested thatthe lack of state transition-dependent excitation energytransfer from LHCII to PSI in ch1-2 (Figs. 3 and 4) cor-relates with the lack of P-LHCII (Fig. 5A). It is worthmentioning that the content of phosphorylated PSIIcore subunits in the ffcmutant in state II conditions washigher than in the wild-type plants, which indicatesthat ffc is subjected to photoinhibition (Bonardi et al.,

2005; Tikkanen et al., 2008b). In contrast, in the chaosmutant, P-LHCII was detected in state II conditions, butin lesser amounts than in Ler-0 plants (Fig. 5A). Semi-quantitative analysis of the immunoblot in Figure 5Asuggested that the LHCB1 level in chaos was highlycorrelated with the P-LHCII level (Fig. 5B). This findingimplies that STN7 in chaos was activated to phosphor-ylate LHCII under state II conditions. However, nostate transition was actually observed in the chaos mu-tant, which in this respect behaves like ch1-2 and stn7/8.

Protein Composition of Photosynthetic Complexes in ch1-2and cpsrp Mutants

Although phosphorylation of LHCII occurred in thechaos mutant under state II conditions (Fig. 5), LHCII-PSI-LHCI supercomplexes were not detectable by BN

Figure 4. Analysis of state transitions bylpBN-PA gel electrophoresis. A, Equalamounts of thylakoid membranes (9 mgof Chl) from wild-type plants (Col-0 andLer-0) and the stn7/8, ch1-2, ffc, andchaos mutant plants, which had beenadapted to state I light (far-red light of730 nm) or state II light (the red light of660 nm), were solubilizedwith 1% (w/v)digitonin and fractionated by lpBN-PAGE. B, Individual lanes from thelpBN-PA gel in Awere then subjected toSDS-urea-PAGE in the second dimen-sion. Total proteins were visualized byCoomassie Brilliant Blue staining. Iden-tities of the relevant proteins are indi-cated by arrows. The major PSI proteins,PsaA/B, as well as LHCII proteins in theLHCII-PSI-LHCII complexes are circled.Two biological replicates were performed,and similar results were obtained.

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gel electrophoresis (Fig. 4). It has been suggested thatPsaH and PsaL serve as docking sites for P-LHCII in PSI(Lunde et al., 2000; Zhang and Scheller, 2004; Kourilet al., 2005). Thus, we hypothesized that the failure ofchaos to form LHCII-PSI complexes might be due toimpaired docking of P-LHCII at PSI. To test this pos-sibility, we analyzed the accumulation of core subunitsof four photosynthetic complexes, including D1 andCP43 subunits of the PSII complex; cytochrome f (Cyt f)of the Cyt b6f complex; PsaA, PsaH, and PsaL of the PSIcomplex; and the b-subunit of the ATP synthase inplants that were adapted to state II light conditions (Fig.5C). We found increased PsaH and PsaL protein con-tents in chaos in comparison to wild-type plants (eco-type Ler-0), while the other proteins analyzed were notaffected in chaos (Fig. 5C). These observations not onlyindicate that the docking site of P-LHCII at PSI is notaffected in chaos but also prompted us to propose thatcpSRP43 deficiency leads to a specific defect in the LHCbiogenesis (Klimyuk et al., 1999; Hutin et al., 2002).Furthermore, we found reduced levels of plastid-encoded D1 and PsaA, and nuclear-encoded PsaHand PsaL in the ffc mutant (Fig. 5C). This finding sup-ports previous results (Pilgrim et al., 1998; Amin et al.,1999), indicates the role of cpSRP54 in the biogenesis ofplastid-encoded PS core subunits, such as D1 (Richteret al., 2010), and suggests an instability of PS corecomplexes in the ffc mutant.

Distribution of Phosphorylated Proteins in the ThylakoidMembranes from ch1-2 and cpsrp Mutants

To address the distribution of P-LHCII in the granamargin regions of thylakoid membranes, thylakoidmembranes adapted to state II conditions were isolatedand solubilized with digitonin. The dominant photo-synthetic pigment-protein complexes obtained wereanalyzed on 2D lpBN-SDS-PA gels. PhosphorylatedLHCII and PSII core subunits were quantified by thephospho-Thr immunoblot. In agreement with a recentreport (Grieco et al., 2015) and in contrast with stn7/8(Fig. 6B), P-LHCII was not only found in LHCII-PSI-LHCI supercomplexes but also in the megacomplexescontaining PSII-LHCII-PSI-LHCII and/or PSII-LHCIIsupercomplexes, dimeric and monomeric PSII com-plexes, and in LHCII trimers in both wild-type and ffcplants (Fig. 6, A, D, and F). Consistent with Figure 5A,very low levels of phosphorylated LHCII and PSII coresubunits were detected in ch1-2 (Fig. 6C). Notably, sincewe found that P-LHCII exhibited the same migrationrate on the lpBN-PAGE as P-D1, P-D2, and P-CP43 inthe chaosmutant, we assume that P-LHCII is associated

Figure 5. Phosphorylation and steady-state levels of thylakoid proteins.A, Representative antiphospho-Thr (Anti-P-Thr) immunoblot showingthe phosphorylation of the PSII core proteins (P-D1, P-D2, and P-CP43)and the LHCII (P-LHCII) proteins, and anti-LHCB1, anti-LHCA1, andanti-ATPase beta immunoblots showing the steady-state protein levelsin the thylakoids of wild-type (Col-0 and Ler-0) and stn7/8, ch1-2, ffc,and chaos mutant plants, which were adapted to state I light (far-redlight, 730 nm) or state II light (red light, 660 nm). Each sample contained1 mg of Chl. To control for loading, the thylakoid proteins were stainedwith Ponceau red (Ponceau S). Three biological replicates were per-formed, and similar results were obtained. B, Immunoblots in A wereanalyzed with Phoretix 1D software (Phoretix International). The rela-tive amounts of LHCB1 and LHCA1 were normalized to the level of theb-subunit of the ATP synthase (ATPase b). The relative phosphorylationlevel of the LHCII proteins was further normalized to the protein levelsof LHCB1. Phosphorylation and protein levels in the mutant plants areshown relative to the levels in the wild-type plants (100%). C, Steady-state protein levels in the thylakoids of wild-type (Col-0 and Ler-0) as

well as stn7/8, ch1-2, ffc, and chaosmutant plants, whichwere adaptedto state II light (red light, 660 nm). Aliquots of 15 mg of total thylakoidproteins were loaded on the gels. Description of thylakoid membraneprotein complexes and their diagnostic components are labeled on theleft. Two biological replicates were performed, and similar results wereobtained.

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with PSII complexes rather than with the remainingPSI-LHCI complexes or PSI core complexes (Fig. 6E).

DISCUSSION

Diverse Accumulation of LHCI and LHCII When theAvailability of Chl b or the Integration of LHC Apo-Proteins into Thylakoid Membranes Are Limiting

Integration of newly synthesized Chl a and Chl b intothe LHC apo-proteins is essential for the stability,folding, and membrane insertion of functional LHCsand is a prerequisite for the association of LHCs withcore complexes of two photosystems (Dall’Osto et al.,2015; Wang and Grimm, 2015). Thus, impaired synthesisof Chl and LHC apo-proteins, as well as dysfunctionalposttranslational translocation of LHC apo-proteins fromthe cytosol to the chloroplasts by the TOC/TIC trans-locons and from the stroma to thylakoid membranes bythe cpSRP machinery, could disrupt the association andassembly of LHCs in the thylakoids.

For the first time, to our knowledge, we have mea-sured the accumulation of multiple PS-LHC super-complexes and the allocation of phosphorylated LHCIIto the two photosystems during state transitions in aChl b-less mutant and cpsrp mutants (Figs. 1 and 2). Itwas expected that these mutants show the formation ofdifferent photosynthetic protein complexes with theintention to balance the excitation status of PSI and PSII.Lack of one or two components of cpSRP machinery,cpSRP43 and cpSRP54, caused simultaneously reducedlevels of LHCI and LHCII (Fig. 1). In consequence, thecomparatively strong decrease in LHCI and LHCIIcontent in the chaos mutant led to accumulation of freePSI and PSII core complexes in place of the multiplePS-LHC complexes observed in wild-type chloroplasts(Figs. 1 and 2). These observations further support theidea that the cpSRP machinery acts nonselectively onthe posttranslational targeting of LHCI and LHCII apo-proteins to thylakoid membranes (Richter et al., 2010).

In contrast, the ch1-2 mutant, which is defective inChl b synthesis, exhibited rather stable LHCI complexesand wild-type-like PSI-LHCI supercomplexes, whileLHCII content in ch1-2 was drastically reduced to alevel comparable to that in chaos (Figs. 1 and 2). Theseobservations are supported by the finding that the PSIantenna is larger than that of PSII in ch1-2 (Fig. 3).

Two possible explanations for the preferential sta-bility of LHCI rather than of LHCII are proposed whenavailability of Chl b are limiting. Firstly, considering thevarying specificity of LHCI and LHCII for Chl a andChl b (Schmid, 2008), due to the enhanced promiscuityof LHCI, the Chl b-binding sites of LHCI proteins couldbe filled by Chl a when Chl b is in short supply. Indeed,in vitro reconstitution analyses have shown that Chl a

Figure 6. Distribution of phosphorylated LHCII proteins and PSII coresubunits in the thylakoid complexes. Equal amounts of thylakoidmembranes (9 mg of Chl) from wild-type plants (Col-0, A and Ler-0, F)and stn7/8 (B), ch1-2 (C), ffc (D), and chaos (E) mutants, which had beenadapted to state II light (red light, 660 nm),were solubilizedwith 1% (w/v)digitonin and separated by lpBN-PAGE. Individual lanes from thelpBN-PA gel were subjected to SDS-urea-PAGE in the second dimen-sion, immunoblotted, and probed with an antiphospho-Thr antibody

(Anti-P-Thr). The P-LHCII and PSII proteins (P-D1, P-D2, and P-CP43)were indicated by arrows. The proposed P-LHCII proteins associatedwith PSI-LHCI complexes are circled.

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can in fact be integrated into LHCI apo-proteins, suchas LHCA2 and LHCA4, to form the stable LHCI(Schmid et al., 2002). Furthermore, the Chl a-containingLHCI has been characterized in the ch1-1mutant, whichlacks Chl b altogether (Havaux et al., 2007; Takabayashiet al., 2011). However, the Chl a-containing LHCI wasless tightly associated with PSI core complexes, indi-cating Chl b is essential for the efficient energy transferand stable assembly of PSI-LHCI supercomplexes(Takabayashi et al., 2011). Thus, the residual amount ofChl b in ch1-2 (20% of the wild-type level) might well besufficient for the organization of functional PSI-LHCIsupercomplexes (Figs. 1–3).

Secondly, we suggest that newly synthesized Chl bmight be preferentially integrated into LHCI ratherthan LHCII, particularly when only limited amounts ofChl b are available. This hypothesis can be supportedby our finding of the preferential accumulation of LHCIin ch1-2 (Figs. 1 and 2). So far, very little attention hasbeen paid to the mechanisms that determine the dis-tribution of newly synthesized Chl to the various LHCand PS-LHC complexes. What knowledge we dohave is based on radioactive labeling with 14C. Theradiolabeling experiments with Chl precursor mole-cules carried out on organisms exposed to high-lightlevels confirmed ongoing Chl synthesis in both higherplants (Beisel et al., 2010) and cyanobacteria (Kopecnaet al., 2012). Interestingly, in the cyanobacteria, thefreshly synthesized Chl was localized predominantly inPSI and to a lesser extent in PSII (Kopecna et al., 2012).In contrast, most of the fresh Chls produced in thechloroplasts of higher plants were suggested to supportthe PSII repair cycle, since PSI is very stable underhigh-light stress (Feierabend and Dehne, 1996). In thiscontext, ch1-2 could be a useful tool for assessing therelative affinities of LHCI and LHCII for Chl b duringtheir biogenesis.

Modified State Transitions Observed in ch1-2 and chaosImply the Flexible Association of LHCs withTwo Photosystems

To balance the excitation status of PSI and PSII, statetransitions enable the rapid and efficient modificationof the relative antenna size of the two photosystems inresponse to fluctuating light conditions (Allen andForsberg, 2001; Rochaix, 2011; Goldschmidt-Clermontand Bassi, 2015; Gollan et al., 2015). In the state I-to-stateII transition, phosphorylated LHCII proteins associatewith PSI-LHCI to favor the absorption cross-section ofPSI. However, increased absorption cross-section of PSIand formation of LHCII-PSI complexes were notdetected in ch1-2 and chaos upon exposure to PSII-favoring light (Figs. 3 and 4), suggesting a block ofthe state I-to-state II transition in both ch1-2 and chaosmutants.

According to the canonical model of state transitions,phosphorylation of LHCII is an essential prerequisitefor state I-to-state II transition and triggers the disso-ciation of LHCII from PSII and promotes its lateral

migration to PSI-LHCI-enriched regions of thylakoidmembranes (Allen, 1992; Rochaix, 2011). In this way,the missing formation of LHCII-PSI-LHCI complexes inch1-2 is associated with the lack of P-LHCII under stateII light conditions (Figs. 5A and 6C), which is explainedby repression of STN7 activity. It is striking that incomparison with wild-type and cpsrp mutant plants,ch1-2 exhibited 2-fold larger antenna size of PSI thanthat of PSII (Fig. 3). In contrast, chaos exhibited theLHCII antenna similar to that in ch1-2 but less LHCIantenna (Figs. 1 and 2). This leads to the comparablybalanced excitation state of PSI and PSII. The phos-phorylation of LHCII was observed in chaos in the stateII conditions (Figs. 5A and 6E), suggesting the moreactivated STN7 in chaos mutant than that in ch1-2 mu-tant. We assume that the electron transfer chain and thePQ pool were more oxidized in ch1-2 than in wild-typeand chaosmutants. In turn, oxidation of PQ pool in ch1-2will lead to inactivation of STN7.

As phosphorylation of LHCII is observed in chaosupon exposure to PSII light, balanced distribution ofexcitation energy between PSI and PSII is likely to berequired under state II conditions. However, P-LHCIIof chaoswas associated with PSII complexes rather thanwith PSI core complexes or a residual amount of intactPSI-LHCI supercomplexes (Fig. 6E). The localization ofP-LHCII could result from a failure to dissociate fromPSII or an inability to dock at PSI. The latter prospect ischallenged by the elevated accumulation of LHCII-PSIcore complexes in the lhca4mutant (Benson et al., 2015)and the DLhcamutant (Bressan et al., 2016), which wereadapted to state II conditions. Structural studies ofLHCII-PSI-LHCI complexes showed an opposite lo-calization of P-LHCII and LHCI within the state-transition supercomplexes (Kouril et al., 2005; Dropet al., 2014). It is very unlikely that LHCI contributes tostable docking of LHCII at PSI complexes.

We propose that an impaired dissociation of P-LHCIIfrom PSII results from a strongly reduced content ofLHCII in chaos (Figs. 1 and 2). It is expected that amobile P-LHCII pool is limited to migrate toward PSIcomplexes and form LHCII-PSI complexes. Althoughfree phosphorylated LHCII trimers could be detected inchaos (Fig. 6E), the majority of LHCII trimers were as-sociated with dimeric PSII core complexes (Figs. 2 and4). According to the binding affinity of LHCII trimer tothe PSII homodimer, S (strong), M (medium), and L(loose) variants of LHCII trimers were found in thethylakoid membranes of higher plants (Dekker andBoekema, 2005). It was indicated that the L-LHCIItrimers could be associated with PSI, while the S-LHCIIand M-LHCII are unlikely to be involved in state tran-sitions (Pietrzykowska et al., 2014). Thus, the failure toform P-LHCII-PSI complexes in chaos is proposed to bedue to the lack of a mobile LHCII pool.

In summary, the distinct accumulation of LHCI andLHCII complexes in ch1-2 and cpsrp mutants not onlyunderlines the requirement for coordination of Chl bi-osynthesis and the posttranslational integration ofLHC apo-proteins into thylakoid membranes (Dall’Osto

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et al., 2015; Wang and Grimm, 2015), but also indicatesthe variable accumulation of LHCI and LHCII com-plexes, when Chl b synthesis is compromised in ch1-2mutant. Furthermore, the detailed comparative analy-sis of state transitions in ch1-2 and chaos mutants pro-vides evidence for the flexible association of LHCs withthe two photosystems.

MATERIALS AND METHODS

Plant Materials, Growth Conditions, and Light Treatment

The following Arabidopsis (Arabidopsis thaliana) mutants were used in thisstudy: ch1-2, which contains a V274E mutation in the Rieske binding site(CS3120; Espineda et al., 1999), the maize Ds transposon-containing cpsrp43mutant chaos (Klimyuk et al., 1999), the T-DNA insertion lines ffc (cpsrp54,CS850421; Pilgrim et al., 1998), cpftsy (SALK_049077; Tzvetkova-Chevolleauet al., 2007) and stn7/8 (Bonardi et al., 2005), and the chaos/ffc double mutant(Hutin et al., 2002), together with the wild-type Arabidopsis Col-0 and Ler-0.Wild-type and mutant Arabidopsis plants were routinely grown at 22°C and70% humidity with 100 mM photons m22 s21 on a 16-h-light/8-h-dark photo-period.

Pigment Analysis

Chls were extracted from leaves with alkaline acetone (100% acetone:0.2 M

NH4OH, 9:1) and analyzed using reversed-phase chromatography on an Agi-lent HPLC system as described (Schlicke et al., 2014).

Isolation of Thylakoid Membranes

Thylakoidmembraneswere isolated fromArabidopsis plants grown inwell-controlled phytochambers or adapted to state I or state II conditions in thepresence of 10 mM sodium fluoride NaF as described (Järvi et al., 2011). Chlconcentration was determined as described (Wellburn, 1994).

77K Fluorescence Emission Spectroscopy

Freshly isolated thylakoids equivalent to 10 mg Chl mL21 were resuspendedin Chl fluorescence buffer (20 mM HEPES, pH 7.8, 60% glycerol, 300 mM Suc,5 mM MgCl2) and frozen in liquid nitrogen. Chl a fluorescence emission wasdetected using a F-6500 fluorometer (Jasco). The samplewas excited at a 475-nmwavelength. The emission spectra between 655 nm and 800 nm were recordedwith a bandwidth of 10 nm.

Second Dimensional lpBN-SDS-PAGE

lpBN-PAGE was performed essentially according to Järvi et al. (2011). Tocomprehensively analyze the PSI-LHC supercomplexes present in grana andunstacked thylakoids, freshly isolated thylakoids equivalent to 0.5 mg Chl mL21 weresolubilized with 1% b-DM at 4°C for 5 min. To detect the LHCII-PSI-LHCIsupercomplexes formed during state transitions, freshly isolated thylakoids werepartially solubilized with 1% (w/v) digitonin at room temperature for 15 min. Forthe second dimensional SDS-PAGE analysis, the excised lpBN-PAGE lanes weresoaked in SDS sample buffer (50 mM Tris-HCl, pH 6.8, 2% SDS, 10% glycerol,0.002%bromophenol blue, and 50mMDTT) for 0.5 h at room temperature and thenlayered onto 12% SDS-PAGE gels containing 6 M urea. The gels were stained withCoomassie Brilliant Blue G250 or used for immunoblot analyses.

Immunoblot Analyses

For immunoblot analysis, total thylakoid proteins normalized to equal Chlcontents were separated on 12% SDS-PAGE gels containing 6 M urea. Afterelectrophoresis, proteins were transferred to nitrocellulose membranes (GEHealthcare) and probed with specific antibodies directed against the light-harvesting antenna proteins LHCA1 and LHCB1 (Agrisera); the PSI core subu-nits D1 and CP43 (Agrisera); the Cyt b6f subunit Cyt f (Agrisera); the PSI coresubunits PsaA, PsaH, and PsaL (Agrisera); the ATP synthase b-subunit (Agrisera);

and phosphorylated thylakoid proteins (anti-P-Thr,NewEngland Biolabs). Signalswere detected with the SuperSignal West Pico Chemiluminescent Substrate(Thermo Scientific).

ACKNOWLEDGMENTS

We thank Dr. Danja Schünemann for all cpsrp mutants and discussion ofimpaired PSI-LHCI complexes in chaos mutant, and Dr. Dario Leister for thestn7/8 mutant.

Received June 24, 2016; accepted September 21, 2016; published September 23,2016.

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