cindy zheng, pragma9, 10/21/2005 pragma grid testbed & routine-basis experiments may – october...

Cindy Zheng, PRAGMA9, 10/21/2005

PRAGMA Grid Testbed&

Routine-basis ExperimentsMay – October 2005

Cindy ZhengPacific Rim Application and Grid Middleware Assembly

San Diego Supercomputer CenterUniversity of California, San Diego

http://pragma-goc.rocksclusters.org


PRAGMA Grid TestbedPRAGMA Grid Testbed

AIST, Japan

CNIC, China

KISTI, Korea

ASCC, Taiwan

NCHC, Taiwan

UoHyd, India

MU, Australia BII, Singapore

KU, Thailand

USM, Malaysia

NCSA, USA

SDSC, USA

CICESE, Mexico

UNAM, Mexico

UChile, Chile

TITECH, Japan

UMC, USA

UZurich, Switzerland

GUCAS, China



PRAGMA Grid resources http://pragma-goc.rocksclusters.org/pragma-doc/resources.html


QMMDhttp://pragma-goc.rocksclusters.org/applications/qmmd/qmmd_requirement.html

• Quantum mechanics application• Ninf-G based• Driver: Hiroshi Takemiya (AIST)• Running on 6+4 sites for 5 days• Ready on 12 sites:

– AIST: Yoshio Tanaka, Yusuke Tanimura – ASCC: Hurng-Chun Lee, Mike Chiang– CNIC: Kai Nan, Kevin Dong– KISTI: Jysoo Lee, Jae-Hyuck Kwak– KU: Somsak Sriprayoonsakul, Sugree Phatanapherom – NCHC: Weicheng Huang, Chien-Lin Huang– NCSA: Radha Nandkumar, Tom Roney– SDSC: Mason Katz, Cindy Zheng– TITECH: Satoshi Matsuoka, Hitoshi Aoki – UNAM: Jose Luis Gordillo Ruiz, Eduardo Murrieta Leon– UoHyd: Arun Agarwal, Rajeev Wankar, Neelakanta Reddy– USM(hawk): Habibah Wahab, Suhaini Ahmad


Savannahhttp://pragma-goc.rocksclusters.org/applications/savannah/default.html

• Wildfire simulation• Nimrod/G based• Driver: Colin Enticott (MU)• Ready on 10 sites:

– AIST: Yoshio Tanaka, Yusuke Tanimura– ASCC: Hurng-Chun, Lee, Mike Chiang– KISTI: Jysoo Lee, Jae-Hyuck Kwak– KU: Sugree Phatanapherom, Somsak

Sriprayoonsakul– MU: David Abramson – NCHC: Weicheng Huang, Chien-Lin Huang– NCSA: Radha Nandkumar, Tom Roney– SDSC: Mason Katz, Cindy Zheng– TITECH: Satoshi Matsuoka, Hitoshi Aoki– UNAM: Jose Luis Gordillo Ruiz, Eduardo

Murrieta Leon– UoHyd: Arun Agarwal, Rajeev Wankar,

Neelakanta Reddy


Gfarmhttp://pragma-goc.rocksclusters.org/applications/gfarm/gfarm.html

• Gfarm – grid virtual file system

• Development lead: Osamu Tatebe (AIST)

• Ready on 7 sites:– AIST: Yusuke Tanimura, Yoshio Tanaka – ASCC: Mike Chiang, Hurng-Chun, Lee – KISTI: Jae-Hyuck Kwak, Jysoo Lee – NCHC: Chien-Lin Huang, Weicheng Huang – NCSA: Tom Roney, Radha Nandkumar – SDSC: Cindy Zheng, Mason Katz – TITECH: Hitoshi Aoki, Satoshi Matsuoka


Community Scheduling Frameworkhttp://pragma-goc.rocksclusters.org/softdepot/zding_csf.ppt

• Interface GT4 and local schedulers• Implementation and deployment lead: XiaoHui Wei and

ZhaoHui Ding (JLU)• Supported by:

– SDSC: Wilfred Li, Cindy Zheng– AIST: Yoshio Tanaka

4CSF

24 3

PBSPBS

PBS

SGE

SGE


iGAPhttp://pragma-goc.rocksclusters.org/applications/igap/igap.html

• Genome annotation pipeline

• Use CSF/Gfarm

• Driver: Wilfred Li (SDSC)

• Ready on 7 sites:– AIST: Yoshio Tanaka, Yusuke Tanimura– ASCC: Hurng-Chun Lee, Mike Chiang– KISTI: Jysoo Lee, Jae-Hyuck Kwak – NCHC: Weicheng Huang, Chien-Lin Huang– NCSA: Radha Nandkumar, Tom Roney– SDSC: Mason Katz, Cindy Zheng– TITECH: Satoshi Matsuoka, Hitoshi Aoki


SCMSWebhttp://pragma-goc.rocksclusters.org/scmsweb/

• Grid monitoring + accounting

• Development lead: KU: Putchong Uthayopas, Somsak Sriprayoonsakul, Sugree Phatanapherom

• Collaborations:

– Solaris porting at CICESE: Raul Hazas, Areli Garcia

– IA64 porting at CNIC: Kevin Dong

• Deployed on 15 sites:– AIST: Yoshio Tanaka, Yusuke Tanimura

– ASCC: Hurng-Chun Lee, Mike Chiang

– BII: Stephen Wong, Damien Leong Wye Kit

– CICESE: Raul Hazas, Salvador Castaneda, Julian Delgado

– CNIC: Kai Nan, Kevin Dong

– KISTI: Jysoo Lee, Jae-Hyuck Kwak

– KU: Sugree Phatanapherom, Somsak Sriprayoonsakul

– NCHC: Weicheng Huang, Chien-Lin Huang

– NCSA: Radha Nandkumar, Tom Roney

– SDSC: Mason Katz, Cindy Zheng

– TITECH: Satoshi Matsuoka, Hitoshi Aoki

– UChile: Alejandro Jofre, Juan Carlos Maureira

– UNAM: Jose Luis Gordillo Ruiz, Eduardo Murrieta Leon

– UoHyd: Arun Agarwal, Rajeev Wankar, Neelakanta Reddy

– USM(hawk): Habibah Wahab, Suhaini Ahmad


MOGAShttp://ntu-cg.ntu.edu.sg/pragma/gridacctinfo

• Grid accounting system• Development lead: NTU – Francis Lee, Junwei Lee• Deployed on 7 sites:

– AIST: Yoshio Tanaka, Yusuke Tanimura

– KISTI: Jysoo Lee, Jae-Hyuck Kwak

– NCSA: Radha Nandkumar, Tom Roney

– SDSC: Mason Katz, Cindy Zheng

– TITECH: Satoshi Matsuoka, Hitoshi Aoki

– UNAM: Jose Luis Gordillo Ruiz, Eduardo Murrieta Leon

– USM(hawk): Habibah Wahab, Suhaini Ahmad


Grid-enabling Applications• Ocean science (CICESE, Mexico)

– IGrid05 demoRaul Hazas, Luis Farfán, Salvador Castaneda,

Julian Delgado • GAMESS/APBS (UZurich, Switzerland)

Kim Baldridge, Celine Amoreira• FLARM, Drug-design (CNIC, China)

Bin Shen, Kevin Dong• San Andreas Fault simulation (iGEON)

Mian Liu (UMC), Huai Zhang (GUCAS)


Ninf-G/NMI/Rocks Integration

• Ninf-G-2.4/NMI– Lead integrators:

• Yoshio Tanaka (AIST)• Mats Rynge (NMI)

• Ninf-G 2.4 Rocks Roll – Lead integrators:

• Mason Katz (SDSC)• Yoshio Tanaka (AIST)


• Naregi-CA - certificate authorization system• Gama - trust management system• Collaborators:

– Naregi, Japan• Shinichi Mineo• Takto Okuno

– SDSC, USA• Sandeep Chandra• Kurt Mueller• Mason Katz• Cindy Zheng

GAMGAMAA

GAMA/Naregi-CA Integration


Network Measurementshttp://pragma-goc.rocksclusters.org/pragma-grid-status/testbed_amp.htm

• Deployed NLANR AMP to all testbed sites• AMP data map on pragma-goc• AMP map software

– PRIME project– AMP data interface

• Collaborators:– NLANR: Tony McGregor, Ronn Ritke, Bud Hale,

Jeremy Kallstrom– UCSD: Peter Arzberger, Cindy Zheng, John Lee– CNIC: Kai Nan, Kevin Dong– UChile: Alejandro Jofre, Juan Carlos Maureira– UoHyd: Arun Agarwal, Vinod Kumar– USM(hawk): Suhaini Ahmad, Habibah Wahab,

Ruzaimi Azizan– UZurich: Kim Baldrige, Wibke Sudholt


Group paperIssues and Methods for Building a Multi-Application International Grid Resource

Cindy Zheng, Mason Katz, Peter Arzberger, Philip M. Papadopoulos

University of California, San Diego, USA

Yoshio Tanaka, Yusuke Tanimura, Osamu Tatebe

National Institute of Advanced Industrial Science and Technology, Japan

David Abramson, Colin Enticott, Slavisa Garic, Shahaan Ayuub

Monash University, Australia

Putchong Uthayopas, Somsak Sriprayoonsakul, Sugree Phatanapherom

Kasetsart University, Thailand

Jae-Hyuck Kwak

Korea Institute of Science and Technology Information, Korea


Thank you


cindy zheng, pragma9, 10/21/2005 pragma grid testbed & routine-basis experiments may – october...

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