chemical metrology and biometry department national institute of metrology (thailand) ccqm p103.1...
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![Page 1: Chemical Metrology and Biometry Department National Institute of Metrology (Thailand) CCQM P103.1 “Measurement of multiple RNA transcripts” Duangkamol](https://reader030.vdocuments.mx/reader030/viewer/2022033101/56649e965503460f94b9a195/html5/thumbnails/1.jpg)
Chemical Metrology and Biometry DepartmentChemical Metrology and Biometry Department
National Institute of Metrology (Thailand)National Institute of Metrology (Thailand)
CCQM P103.1CCQM P103.1
““Measurement of multiple RNA transcripts”Measurement of multiple RNA transcripts”
Duangkamol ViroonudompholDuangkamol Viroonudomphol
Chaiwat PrawettongsoponChaiwat Prawettongsopon
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Real-time PCR Real-time PCR
Instrument: ABI 7500 Real Time PCR System
RT-qPCR kit: AgPath-ID RT-PCR Reagents kit (ABI)
Reaction: 10 µl, RNA sample = 1 µl/reaction
Analysis software: 7500 Software V 2.0.6
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ERCC measurementERCC measurement: : Absolute quantificationAbsolute quantification
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Transcript U1 copies number U2 copies number Relative expression Ratio
(U1/U2)
Expanded uncertainty
ERCC-13 47173.04 68255.49 0.69 0.22
ERCC-25 5287.89 5258.24 1.01 0.28
ERCC-42 986.5 7285 0.14 0.04
ERCC-99 50061.44 57207.59 0.88 0.33
ERCC-113 20347.24 7070.39 2.88 0.95
ERCC-171 88692.57 17350.62 5.11 1.73
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Optional GOIs: Optional GOIs: Relative quantificationRelative quantification
-Based on a doubling of template with each PCR cycle 2 -∆Cq(U1-U2)
-Normalised with CASC3 GOIs/CASC3
Transcript Relative expression Ratio (U1/U2) Expanded uncertainty
MMP1 42.65 3.76
NES 1.47 0.12
SLC1A3 12.95 1.72
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Source of uncertainty budgetsSource of uncertainty budgets
ERCCs: Regression from the calibrantion, Precision, Pipetting bias
GOIs: Precision, Pipetting bias
Relative expression ratio (a) = U1/U2 = b/c
ua = a √ (ub/b)2 + (uc/c)2
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