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Page 1: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety

CCMB AT A GLANCE2018

Page 2: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety

Information compiled bySomdatta Karak

Science Communications and Public Outreach Officer,CCMB

Page 3: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety

CCMB

A glimpse at the news and updatesfrom CCMB in 2018,

based on Director's presentationsat Research Council Meetings

C C M B A T A G L A N C E - 2 0 1 8

Page 4: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety
Page 5: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety

C C M B A T A G L A N C E - 2 0 1 8 i

Preface

The report gives an overview of various activities at CCMB in theyear 2018. These include research as well as a variety of trainingand outreach programs. The document also gives a glimpse of ourcore strengths and capabilities.

Page 6: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety
Page 7: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety

C C M B A T A G L A N C E - 2 0 1 8 i i

Charter

Active Areas of Interest

Major Research Projects

I N T H I S I S S U E

Research Highlights

1

2

3-7

8-22

P A G E N O

Technology Development and Activities of Societal Relevance

Innovation Hub (iHUB)

Training Programs

Awards & Honors

Key Events

Outreach

New Capabilities

23-27

28-29

30-37

38-45

46-58

59-66

67-70

Contents

Page 8: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety
Page 9: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety

Charter

C C M B A T A G L A N C E - 2 0 1 8 1

The Centre for Cellular and Molecular Biology (CCMB) is one of the constituentnational laboratories of the Council of Scientific and Industrial Research (CSIR), NewDelhi, India.

To conduct research in frontier and multi-disciplinary areas of modern biology,and to seek potential applications of this workTo carry out exploratory work in areas of biology with a view to aid thedevelopment of biochemical and biological technology in the country on a soundbasisTo train people in the advanced areas of biology to serve the needs of developmentin these areas, with special provision for short-term training of staff from otherinstitutions in techniques for which adequate facilities may not exist elsewhereTo provide centralized facilities in the country for new and modern techniques inthe inter-disciplinary areas of biology, and to ensure that these facilities are soorganized, maintained and administered that they can be put to maximal use byresearch workers from other laboratories and institutions in the countryTo interact adequately with other institutions doing basic or applied work in areasrelated to activities of the CentreTo collect, collate and disseminate information relevant to biological research

Page 10: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety

Active Areas of Interest

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The research and development activities at CCMB are grouped under the following key areas:

Developmental BiologyStructural BiologyCell and Stem Cell BiologyGenomics and Epigenetic RegulationMicrobes and Biology of InfectionWildlife Conservation and EcologyCrop ImprovementInnovation & Technology DevelopmentSkill Development Program

Page 11: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety

C C M B A T A G L A N C E - 2 0 1 8 3

Major ResearchProjects

The research projects at CCMB focuson understanding the

cellular processes in several modelorganisms using multi-disciplinary

approaches, as well as seek potentialapplications to solve societal

challenges.

Page 12: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety

CSIR-Funded Research Projects

C C M B A T A G L A N C E - 2 0 1 8 4

MISSION MODE PROJECTS

FAST TRACK TRANSLATIONAL PROJECTS

Paper based affordable microfluidic kit for early pregnancy detection in cattle andbuffaloes, Rs.53.22 lakh (2016-18)

G R Chandak and Puran Singh Sijwali

Vegesna Radha, Amit Asthana  and C B Tripura

G Umapathy and Amit Asthana

G R Chandak

Nano-Biosensors and Microfluidics for Healthcare, Rs.474.52 lakh (2018-20)

Development of simple and affordable diagnostic protocols and diagnostic kit forgenetic diagnosis of Musculopathies and Haemoglobinopathies , Rs.141 lakh (2016-18)

K Thangaraj

Development of male infertility diagnostic kits (DeMID), Rs.90 lakh (2018-20)

Hitendra K Patel

Upscaling of high yielding/elite Samba Mahsuri mutant line SM93 for producttranslation, Rs.145 lakh (2018-20)

Sunil K Verma and Karthikeyan Vasudevan

Development of DNA-based identification system of plant bioresources forconservation, Rs.147 lakh (2018-20)

CSIR funds research under different schemes based on the scope of development ofnew areas of research, multiple institutes partnering to solve a huge challenge,readiness for translation or reaching out to society. Following are the different projectsat CCMB that are funded under various schemes of CSIR.

CSIR Sickle Cell Anemia Mission, Rs. 1415.90 lakh (2017-20)

Page 13: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety

C C M B A T A G L A N C E - 2 0 1 8 5

NICHE CREATION PROJECTS

Genome Regulatory Elements and evolution of complexity, Rs.70 lakh (2018-20)

FOCUSED BASIC RESEARCH PROJECTS

Towards product development in rice using mutants that have traits of agronomicimportance, Rs 391 lakh (2018-20)

Rakesh K Mishra

Rajan Sankaranarayanan

Hitendra K Patel

Imran Siddiqi

Mechanistics and functional role of a chiral proof reading variant in Animalia,Rs.100 lakh (2018-20)

Apomixis technologies for increasing agricultural production, Rs.230 lakh (2018-20)

Genomics and epigenetics in health and disease , Rs.170 lakh (2018-20)

K Thangaraj

Manjula Reddy

Mechanistic insights into bacterial growth and morphogenesis, Rs.55 lakh (2018-20)

Hitendra K Patel

Genome sequencing of halophyte Salicornia brachiata, Rs.148 lakh (2018-20)

CSIR HARITPopularization of Improved Samba Mahsuri, a bacterial blight resistant anddiabetic friendly rice to increase farmers' income , Rs.190 lakh (2018-20)

Hitendra K Patel

Page 14: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety

Grant-in Aid Research Projects

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Role of epigenetics in the vicious cycle of diabetes and pregnancy (VICYDIP),Rs.391.27 lakh by DBT (2014-18)Epigenetic mechanisms linking maternal pre- conceptional micronutrientsupplementation with offspring health in India and The Gambia, Rs.382.88lakh by DBT/MRC (2016-19)

G R Chandak

Rajan Sankaranarayanan

Mechanistic and functional studies on chiral proofreading during translationof the genetic code, Rs.495.912 lakh by DBT, Centre of Excellence (2016-21)

Regalla Kumaraswamy

Role of non-coding RNAs in cardiovascular diseases, Rs.356.35 lakh byWellcome DBT India Alliance (2017-22)

Satish Kumar

Transcriptome analysis in Indian Buffalo and the genetics of innate immunity,Rs.342.67 lakh, DBT (2014-18)

Genetic and epigenetic control of plant meiosis, Rs.341.98 lakh by DBT, Centreof Excellence (2017-22)

Imran Siddiqi

Jyotsna Dhawan MUSTER-Musculoskeletal stem cells targeting, Rs.223.44 lakh by DBT (2017-21)

Sonal Nagarkar Jaiswal

Deciphering the role of Cop9 signalosome in neural development, Rs. 355.05lakh by Wellcome DBT India Alliance (2019-24)

CCMB competes for funding from reputed national and international sources forits research projects. Below are some of the major projects (with funding morethan Rs 1 cr) at CCMB that are currently being implemented:

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C C M B A T A G L A N C E - 2 0 1 8 7

Santosh KumarCharacterization of molecular events of transmembrane immunoreceptorsignalling , Rs.357.30 lakh by Wellcome DBT India Alliance (2019-24)

Karthikeyan VasudevanImproving capacity and strengthening wildlife conservation for sustainablelivelihoods in Kashmir Himalaya, Rs 340.95 lakh, by National Mission onHimalayan Studies (2019-2022)

Page 16: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety
Page 17: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety

Research Highlights

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Over the last one year, CCMB'sresearch has appeared in

international peer-reviewed journalsincluding some of the most widely

read and revered journals in the field. New faculty members with theirspecialized skills and a thoroughacademic experience have joined

CCMB.

8

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Publications

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137 research papers from CCMB were published in 2018 - many of those in esteemedand widely read international academic journals.

Page 19: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety

Some of the Key Findings

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Phospholipid headgroup charge as a key determinant inmembrane interfacial water dynamics

It is one of the first experimental evidenceson modulation of membrane interfacialwater dynamics   by membrane lipidcomposition in a concentration-dependentmanner using Terahertz (THz)spectroscopy (1 THz = 1012 Hz = 1 ps-1). It isa powerful, non-invasive, label-freeaproach to explore membrane hydrationdynamics. This study is important in thebroader context of lipid-proteininteractions in a membrane milieu. Thishas implications for various membraneprocesses such as membrane fusion andviral entry into cells. (Work from AmitabhaChattopadhyay's group, published in TheJournal of Physical Chemistry)

CRISPR mediated  deletion of Evolutionary Conserved Region(ECR) from casein locus in mice

The casein locus is 246kb long and is intron rich. This makes it a potential target forreplacement with other genes by gene editing. However, the locus contains a  147base pairs long conserved region (ECR) in all mammals and its  function is yetknown. A CRISPR mediated deletion of ECR in mice through CRISPR leads to anexpression of an unknown protein and occasional discoloration of tongue andincisors.  (Unpublished work from Dr Satish Kumar's group)

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C C M B A T A G L A N C E - 2 0 1 8 1 1

Mechanisms to ensure a faithful translation of proteins

This study investigates how bacterial enzyme DTD cleaves glycine that is wronglypaired with tRNAAla 1000 times more specifically than tRNAGly correctly pairedwith glycine in bacteria. They report the DTD identifies if the nitrogenous base atposition 73 (N73) in tRNAs is a purine or a pyrimidine. tRNAGly houses an uracil (apyrimidine) at N73 while tRNAAla houses an adenine (a purine). N73, termed as thediscriminator base enables DTD to identify if glycine is paired with tRNAGly ormispaired with tRNAAla with 100 times specificity. It also reports that identificationof the G3.U70 pairing in the tRNAAla structure enables DTD to cleave glycine pairedwith tRNAAla with 10 times more specificity than with tRNAGly. (Work from RajanSankaranarayan's group, published in eLife)

A variant of DTD (in green in the fig beside) in Animalia, called the ATD (in blue) haveuncannily similar structures except thepart highlighted in the circle. Thedifference in the positioning of the aminoacids in ATD here creates an active sitepocket for holding small L amino acids.Like DTD, ATD can also cleave wronglypaired tRNAs and amino acids . The case inpoint in this study is amino acid alaninemischarged on tRNAThr. (Work from RajanSankaranarayan's group, published inNature Communications)

Page 21: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety

C C M B A T A G L A N C E - 2 0 1 8 1 2

Impacts of Vitamin B12 deficiency on cognitive function

Nutritional imbalance during early life acts as a physical stress for the developingbrain. Vitamin B12 is an important micronutrient that is essential for braindevelopment and functioning. Neuronal metabolic activity has been found to bereduced in vitamin B12 deficient female mice. The deficiency in these mice led toincreased anxiety, memory impairment and impaired maternal care. Severe vitaminB12 deficiency in mice also induced depression. (Work from Dr Arvind Kumar'sgroup, published in Nutritional Neuroscience) A parellel study shows decrease in the metabolic activity of glutamatergic(excitatory) and GABAergic (inhibitory) neurons. This suggests impairment ofneurotransmission in vitamin B12 deficient mice. (Unpublished work from Dr AnantPatel's group)

Three-dimensional models of Mycobacterium tuberculosisproteins and their docking analyses with unconventionaldrugs

Sildenafil, tadalafil and vardenafil drugsare known for their usage in treatmentof erectile dysfunction. Bioinformaticanalyses suggest that these drugs canbind to quinol binding sites of two ofMycobacterium tuberculosis (M tb)proteins – Rv1555 and Rv1554. Quinolbinding is known to be important foranaerobic  respiration in M tb. Thus, thisstudy opens up the possibility ofrepurposing of drugs used in erectiledysfunction for its use in tuberculosistreatment. (Work from Guruprasad'sgroup, published in BMC StructuralBiology)

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C C M B A T A G L A N C E - 2 0 1 8 1 3

Transcription factor Lef1 switches partners from β-catenin toSmad3 during muscle stem cell quiescence

This study showed gene switchingmolecules change partners to helpmaintain stock of stem cells in muscles.The study showed transcription factorLef1 interacting with β-catenin inactivated muscle stem cells. However,during the quiescent stages of the musclestem cells, Lef1 interacts with Smad3. Thestudy also shows that in absence of β-catenin in activated muscle stem cells,Lef1 interacts with Smad3, and inducequiescent stages of muscle stem cells, andhelp in replenishing the stock of musclestem cells. (Work from Jyotsna Dhawan'sgroup, published in Science Signaling)

Comparison of proteomes of nuclear matrix and mitoticchromosomes in Drosophila: Transmission of hallmarks ofnuclear organization through mitosis

Bioinformatic analyses show that 1953proteins comprise the nuclear matrix(NuMa) proteome while 1511 proteinsmake up the mitotic chromosomes (MiCS)proteome. Of these they share 1390proteins, ie 67% of the NuMa proteome.The study also finds that the features ofnuclear architecture, in the structuralcontext of NuMat, are retained in MiCS,

and possibly play an important role in maintenance of cell lineage specifictranscriptional status during cell division. Thus, they might serve as components ofcellular memory. (Work from Rakesh Mishra's group, published in Molecular andCellular Proteomics)

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C C M B A T A G L A N C E - 2 0 1 8 1 4

Impacts of anesthetics on neural function

Anesthetics are routinely used in surgical procedures in human, and to study thebrain energy metabolism in different neurological conditions in rodents. Thelabeling of amino acids from glucose and acetate is reduced under both theanesthetics, isoflurane and urethane, suggesting reduced neuronal and astroglialmetabolic activity under anesthesia. Of the two, the impact is greater on neuronalmetabolic activity. Among neurons, the reduction in inhibitory function is morethan excitatory activity. (Unpublished work from Anant Patel's group)

Identification of RapGEF1 (C3G), as an importantregulator of differentiation

This study shows that RapGEF1 is able to control nuclear functions likechromatin modifications and RNA splicing, in addition to control of cytoskeletalreorganization. These findings explain why RapGEF1 is essential for earlyembryonic development in mammals. These findings also suggest mutations inRapGEF1 may be associated with human developmental disorders. (Work fromVegesna Radha's group, published in Molecular Biology of the Cell)

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C C M B A T A G L A N C E - 2 0 1 8 1 5

Molecular basis of cholesterol sensitivity ofSerotonin1A receptor

Serotonin1A receptor is a member of G-Protein Coupled Receptors (GPCR)family. GPCRs are transmembrane proteins that help transmit extracellularinformation to the inside of the cells. Their functions have been shown to bedependent on membrane cholesterol. There are cholesterol interaction motifssuch as the cholesterol recognition/interaction amino acid consensus (CRAC)motif, which offer putative interaction sites on GPCRs to facilitate theircholesterol-sensitive functions. Earlier studies from CCMB have shown presenceof conserved CRAC motifs in transmembrane helices II, V and VII of theserotonin1A receptor.  Of these motifs, it is the Lys101 residue of thetransmembrane helix II that mediates cholesterol sensitivity exhibited byserotonin1A receptor, is the highlight of this study. (Unpublished work fromAmitabha Chattopadhyay's group)

Reconstructing the demographic history of theHimalayan and adjoining populations

The prehistoric human settlement in the rugged terrains of the Himalayas ispoorly understood. Through genome analyses, this study shows highersimilarities of the Himalayan and adjoining populations (HAAPs) with those inEast Asia than with the closer neighbours of South Asia. However, now theHAAPs form a distinct genetic cline due to different degrees of admixture withEast and South Asians. The study also estimates a recent westward migrationinto Northeast India and Northern Nepal from the East Asia. (Work from KThangaraj's group, published in Human Genetics)

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C C M B A T A G L A N C E - 2 0 1 8 1 6

Space-maker peptidoglycan hydrolases in bacterial celldivision

A bacterial cell isenveloped with twolayers - an innercytosolic membrane andan outer cell wall. Thecell wall is primarilymade of peptidoglycan(PG) - a single largemesh-like molecule,and completely

Damage responsive elements in Drosophila regeneration

In response to an injury, cells proliferate.A cell's status of proliferating orotherwise is dictated by its geneexpression profile. Thus, the proliferatingcells change their gene expressionpatterns and trigger the regenerationprograms encoded in the genes in casesof injuries. This study identifies DNAregions, namely the Damage ResponsiveRegulatory Elements (DRREs), whichenable triggering the regenerationprograms. The study classifies the DRREsinto 3 kinds - 1. those which become moreaccessible during regeneration, 2. those

encompasses the cytosolic membrane. When the bacterial cell divides, it isessential that the PG mesh has to break to allow more material to come in tomake the new cell. This requires a class of enzymes called the PG hydrolases.This study identifies a new PG hydrolase enzyme, called the MepK. Identifyingthe PG hydrolases offers new targets for developing novel antibiotics. (Workfrom Manjula Reddy's group, later published in Proceedings of NationalAcademy of Sciences of the USA)

that are used during both developmental stages and regeneration, and 3. thosethat act exclusively in damaged tissues. A complete regeneration process seemsto require all 3 kinds. (Work in collaboration with Rakesh Mishra's group,published in Genome Research)

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C C M B A T A G L A N C E F R O M 2 0 1 8 - 1 9 1 7

A novel way to regulate calcium binding in a fungalprotein through domain interaction

Many protein functions are dependent on binding of calcium ions at their signaturecalcium binding sites. These binding sites aremade of units called amino acids. Theirstructure and electric charge typically decidetheir binding partners. So, in all knownexamples where a protein need not bindcalcium, has either these binding sitescompletely absent or have them withalteration in sequence or form of amino acids.This study presents the first example of afungal protein called APP, which cannot bindcalcium though the signature calciumbinding site is present. This is owing to

interaction between its different domains and a resultant change the geometryof the protein. (Work from Yogendra Sharma and Dr R Sankaranarayanan'sgroups, published in Molecular Microbiology)

Towards understanding the basis of body design inDrosophila melanogaster

All cells of the body contain thesame set of genes, and yet they lookand work differently. Expression of aspecial class of genes called thehomeotic genes decide the identityof body structures and segments. InDrosophila melanogaster, the orderof these genes and their regulatorysequences (on the samechromosome) roughly mirrors theorder of the body structures thatthese genes are expressed. Ongoingwork in Rakesh Mishra's group triesto understand the role of regulatoryelements of homeotic genes indeciding the dorso-ventral, anterio-posterior and lateral body axes.

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C C M B A T A G L A N C E F R O M 2 0 1 8 - 1 9 1 8

Lyse and reseal erythrocytes - A simple method forPlasmodium falciparum transfection

Electroporation is a standard method for inserting DNA (transfection) intomalarial parasites. Each transfection requires 50-100 ug DNA, high-endelectroporators, and has varying success rates. A simple, inexpensive and highthroughput method for transfection of malarial parasites has been developedthat works with even 10 ug DNA. In this method, RBCs are lysed undercontrolled conditions in presence of DNA to allow for transfection. The cells arethen resealed with a minor manipulation of the buffer. These resealed RBCs areefficiently infected by malarial parasites, which take up the transfected DNA.These parasites upon selection produce recombinant parasites. This method istermed as Lyse and Reseal erythrocytes (LRE), and it is as efficient as theelectroporation method. (unpublished from Puran Singh Sijwali's group)

Investigating early stages of protein aggregation

Living cells have robustprotein quality controlmechanisms to ensure theircorrect folding, functioningand degrading the proteinsthat are not required ordamaged. With age, thesecontrol mechanisms areknown to weaken, and causeproteins to misfold, aggregateand possibly cause toxicity incells. This study investigatesthe players and mechanisms

of early stages of protein aggregation. It shows that by inhibiting proteasomalmachinery in cells, which helps in degrading proteins, Respiratory ChainComplex (RCC) proteins are one of the first ones to aggregate. It also shows thatspecific signatures in the protein sequence, called the Low Complexity Regionspartially contribute to this aggregation. Aggregation of the RCC proteins couldderegulate formation of functional protein complexes in mitochondria and leadto mitochondrial dysfunction. (Work from Swasti Raychaudhari's group, laterpublished in Journal of Molecular Biology)

Page 28: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety

New Faculty Members

C C M B A T A G L A N C E - 2 0 1 8 1 9

Santosh Kumar

PhD from National Centre for Biological Sciences, Bengaluru, India inBiochemistryPostdoctoral fellow at National Institute of Health

Academic Experience

Understanding the principles of immunoreceptor signaling, using in vitroreconstitution, fluorescence imaging, and cellular biochemistryUnderstanding the T cell and NK cell responses in human diseases, usingtools of single cell sequencing, genomics, and cellular biochemistry

Research Interests

New research faculty members have joined CCMB with prestigiousfellowships.

Wellcome DBT India Alliance Intermediate fellow

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C C M B A T A G L A N C E - 2 0 1 8 2 0

Sonal Nagarkar Jaiswal

PhD from PhD from Bayreuth Univ, Germany in GeneticsPostdoctoral fellow at Baylor College of Medicine, Houston, USA

Academic Experience

Identifying the mechanisms and the molecular players underlying self-renewal and differentiation of neural stem cells using state of the art genomeediting tools and a diverse set of cell and molecular biology approaches inDrosophila’s developing brain and human neuronal stem cells as modelsystems

Research Interests

Wellcome DBT India Alliance Intermediate Fellow

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C C M B A T A G L A N C E - 2 0 1 8 2 1

PhD from Clemson University, USA in Developmental Biology

Megha Kumar

Academic Experience

Elucidating the molecular mechanisms that regulate cell divisiondynamics to understand the basis of developmental disordersusing zebrafish as a model system

Research Interests

DST Inspire Faculty

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C C M B A T A G L A N C E - 2 0 1 8 2 2

PhD from National Centre for Cell Sciences, Pune in Cell BiologyPostdoctoral fellow at Goteborg University,   Sweden, and University ofCambridge, UK

Pavithra Chavali

Academic Experience

Understanding spatio-temporal regulation of Microcephalyproteinsand their implications in disease   and development

Research Interests

Wellcome DBT India Alliance Intermediate Fellow

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Page 33: CCMB AT A GLANCE 2018CCMB AT A GLANCE - 2018 i P r e f a c e The report gives an overview of various activities at CCMB in the year 2018. These include research as well as a variety

TechnologyDevelopment &

Activities of SocietalRelevance

C C M B A T A G L A N C E - 2 0 1 8

Exploratory research at CCMBleads to development of

innovative technologies. CCMBreaches out to public from our

end to educate them of thetechnologies as well as opens upits leads for industries to follow

up.

2 3

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C C M B A T A G L A N C E - 2 0 1 8 2 4

Patents

In 2018, 3 patents have been granted to CCMB, and 5 other applications areunder review.

In IndiaNovel porphyrin derivatives for photodynamic therapy(PDT)

by Danoboyina Ramaiah, Suneesh C Karunakaran, Ch Mohan Rao, K Sridhara Rao, with NIIST In USA

Recombinant protein-based method for the delivery ofsilencer RNA to target the brain

by Gopal Vijaya, Ghulam H. Dar

Biomarkers useful for detection of types, grades andstages of human breast cancer

by Lekha Dinesh Kumar, Vinod Kumar Verma, Rekha A.Nair, Jem Prabhakar, Jayasree Kattoor

PATENTS GRANTED TO CCMB IN 2018

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C C M B A T A G L A N C E - 2 0 1 8 2 5

In China, UK, USAProtein nanostructures for the delivery of therapeuticagents to the anterior segment of eye

by Saad Mohammad Ahsan, Ch Mohan Rao In India

Method for rapid manufacturing of SERS substrates andSERS substrates thereof

by Amit Asthana, Ch Mohan Rao, SK Srivastava, GopiSuresh Oggu

Novel DNA repair protein and biomarker for melanomaby Avinash Srivastava, Rakesh Mishra

PATENTS APPLICATIONS FILED BY CCMBIN 2018

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CSIR-HARIT

CCMB, with Indian Institute of Rice Research (IIRR), has developed a blight-resistant rice variety with a low glycemic index of 0.6 called the Improved SambaMahsuri (ISM). Its traits make it a good choice for paddy cultivators as well asdiabetic consumers. It has been successfully grown in 8 states of India coveringover 3 lac hectares. The current trait value - the amount farmers have earnedmore by cultivating ISM - is estimated to be Rs 554 cr so far. CCMB scientists regularly conduct seed distribution sessions with the farmers inmany parts of the country.

ISM seed distribution to farmers at CSIR-CIMAP, Lucknow on May31st, 2018, at Mahuadih and Pathardeva villages, Deoria District, UPon June 2, 2018

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Next steps in CSIR-HARIT CCMB is now developing a high yielding rice variety, SM93. It matures early withfine grain and cooking quality, resists Yellow Stem Borer, a rice pest found inareas of continuous flooding and damages the stem of the plant. It has alreadypassed two years of national field trials under All India Coordinated RiceImprovement Programme.

SM93 in field trials in Telangana

Yields 7.5tons/hectareMatures in 120 days

Resistant to Yellow Stem Borer

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Innovation Hub(iHUB)

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CCMB's Innovation Hub supportsearly stage entrepreneurs in life

sciences through its startupincubator. It houses Atal

Incubation Centre (AIC-CCMB)for life sciences under Atal

Innovation Mission and CommonResearch and TechnologyDevelopment Hub under

Department of Scientific andIndustrial Research (DSIR).

2 8

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Life Science Startups incubated atiHUB

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The early stage startups housed at iHUB are provided with space and high end researchequipments at a very reasonable cost. Below are the 17 early stage life science startups that have been at iHUB in 2018.

Tardigrade Pvt Ltd Kommareddi  BioPharma Pvt Ltd Magellan  Life Sciences *Oncosimis Biotech Pvt Ltd Theranosis   Life Sciences Pvt Ltd  Helixworks  Technologies Pvt Ltd *Virupaksha Life Sciences Bioartis  Life Sciences Pvt LtdRR Animal Health Care LtdSrikara Biologicals Pvt Ltd Althion Tech Innovations Pvt LtdAvra Life SciencesBhaPra BioSolutions Pvt LtdBionLine Diagnostics (OPC) Pvt LtdConsytel Life Sciences Pvt Ltd

* graduated from AIC-CCMB

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Training Programs

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CCMB runs one of the most successfuland well-established PhD programs in

life sciences in the country. It alsooffers short term research training

programs for post-graduate studentswho are interested in pursuing

research in their careers. In addition, it has initiated several skill

development courses underGovernment of India's Skilling

program.

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PhD Program

CCMB trains young researchers through its rigorous PhD program - well-knownfor its success in building successful leaders in academia, research and lifescience industry. In the academic year 2018-19, 19 students from all across Indiajoined the PhD program at CCMB. During this year, 7 students have beenawarded their PhD degrees. As on Jan 2019, 149 students are enrolled in the PhD program at CCMB.

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Short-term Training Programs

CCMB invites and trains students of science and medicine through manyof its programs. These programs allow students to be trained in researchprojects by being a part of the projects or learn relevant skills.

Various short-term training programs at CCMB are

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Dissertation Research Training Program

In 2018-19, 115 students pursuing M.Sc / M.Pharm/ M.Tech/ B.Pharm/B.Tech in life sciences worked on their dissertations at CCMB. This researchtraining helps them towards partial fulfillment of their educational degrees.

Dissertation research trainees at CCMB presenting their work in form of aposter after their training

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Each year roughly 800 studentsfrom all over India apply for thesummer training program atCCMB. Of the applicants, lesserthan 10% are selected. In 2018,64 students joined CCMB assummer trainees.

Project-based Training Program

CCMB runs a project-based training program for those who are not studentsanymore. In 2018-19, 44 participants attended the program at CCMB.

Summer Training Program

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Skill Development Programs

Analysis of Microbial DiversityEngineering Mammalian Cellswith CRISPR ToolsWildlife Forensics WorkshopNanomaterials and Applicationsin BiologyMolecular Cloning and ProteinExpressionAnalysis of Next GenerationSequencing DataBasics in Cell Biology and Cellbased assaysLC-MS based ProteomicsBasics of Stem Cells

CCMB conducts multiple courses under its skill development program that runfor one to a few weeks. These courses are aimed towards training personnel inand for academia and industry. In 2018-19, 189 participants attended thefollowing courses.

Left: Participants of the Basics in Cell Biology and Cell-Based Assays course in Sept 2018, Right:Participants of Bioinformatics - NGS data analysis course in Aug 2018

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Observership Program for MBBS students

MBBS students from all over the country are invited to attend an observershipprogram at CCMB for two weeks. The program aims to bridge the gap between lifescience research and medical practitioners, and sensitize the latter to theimportance of research in medical practice. In 2018, 21 students attended theprogram. They came from King George's Medical University, Lucknow GovernmentMedical College, Calicut, Maulana Azad Medical College Govt. Medical College,Nizamabad Osmania medical college The Apollo Medical College, Mahatma GandhiMedical College and Research Institute, Sri Balaji Vidyapeeth, Kamineni Institute ofMedical Sciences, Narketpally, AIIMS, Rishikesh, AIIMS, New Delhi, AIIMS, RaipurKakatiya Medical College Government Medical College Thiruvananthapuram,Osmania Medical College, University of Delhi.

MBBS students in discussion with CCMB, Director Rakesh Mishra (in the centre)

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Revenue Generation

From Different Training Programs

From Different Services

CCMB earned a total revenue of Rs 189.89 lakh through its various trainingprograms and services.

The revenue generated at CCMB through its training programs andservices highlights their quality and their demand among people.

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Awards & Honors

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Our researchers and students havereceived multiple prestigious

awards and fellowshipscelebrating their scientific

achievements.

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K ThangarajDr. Joseph Thomas Memorial Lecture Award, IIT Madras, ChennaiMember of Int'l Centre for Genomic Medicine in Neuromuscular Diseases, fundedby MRC, UK (Other partners: UK, Brazil, South Africa, Zambia & Turkey)Prof. C. V. Pichappa Endowment Lecture Award, Department of Biochemistry,University of Madras, Chennai Prof. G. Jayaraman Endowment Lecture Award, Department of Genetics, Universityof Madras, Chennai Associate Editor for Tropical Medicine and International Health, Wiley Press Sun Pharma Research Award for the year 2018 in the field of 'Medical Sciences -Basic Research”Elected Fellow, National Academy Sciences – India, AllahabadDr. Palle Rama Rao Award, by Government of Andhra Pradesh, at Andhra PradeshScience Congress, Kadapa

 Faculty Members

G R Chandak

Fellow at National Academy of Medical Sciences, New Delhi, IndiaProf. I C Verma Oration from Indian Society of Human GeneticsMember, Advisory Committee, Mission program on Genomics and ComputationalBiology, DBT, New DelhiMember, Technical Advisory Committee, Indian Statistical InstituteDr Prabha Mehra Foundation Day Oration on the 88th Foundation Day of Dept ofObs & Gyn, KGMU, LucknowMember, Technical Review Committee, SERB, DSTExpert Member on the ‘Chronic Disease Biology’ TEC, DBTMember, SAC, National Institute of Biomedical Genomics, KalyaniDelivered SS Agarwal Memorial Lecture, SGPGIMS, LucknowMember, Expert Committee for evaluation and review of Multi-Centric Networkproject on “Indian Human Microbiome Initiative”Member, PAC on Health Sciences, SERB

Yogendra Sharma Invited to be Adjunct Professor, IISER, Berhampur Elected Fellow, Indian National Science AcademyAwarded J C Bose Fellowship

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Amitabha ChattopadhyayAwarded SERB Distinguished FellowshipElected as Fellow of TWASInvited to be Distinguished Visiting Professor, IIT, BombayInvited to be Adjunct Professor, IISER, KolkataInvited to be a Lead Speaker at the Faraday Discussion on Photo-induced Processesin Nucleic Acids and Proteins, KeralaElected as Member, Board of Studies of Biological Sciences, Academy of Scientificand Innovative Research Awarded 6th G.K. Manna Memorial Lecture Award

Anant Bahadur Patel

EK Zavoisky Fellowship from International Society for Magnetic Resonance inMedicine (ISMRM) to attend the joint Annual Meeting of ISMRM-ESMRMB, Paris,June 2018Two oral presentations, and posters in the joint Annual Meeting of ISMRM-ESMRMB, Paris, June 2018

Rajan Sankaranarayanan

Delivered Dr. M. R. Das Memorial lecture by INSA, New Delhi.Sun Pharma Research Award  in Medical Sciences under Basic Sciences CategoryGD Birla Award for Scientific Research for the year 2017Delivered Sir J C Bose Memorial Lecture at NIPGR, New DelhiDelivered Prof A K Lala Memorial Lecture at IIT, Bombay

Jyotsna Dhawan

Invited speaker, FASEB Summer Research Conference on Muscle Satellite and StemCells, Keystone USA Chair, Raman Research Institute TrustPresident, Indian Society of Developmental Biology

Manjula ReddyMember, Editorial Board, Journal of Bacteriology

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Students & Postdocs

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D V S Sudhakar Travel fellowship from European Society of Human Genetics (ESHG)for attendingESHG-2017 held at Copenhagen, DenmarkDeveloping Country Travel Award to attend the American Society of HumanGenetics Annual Meeting in San Diego, California, USA

Sunil Tripathi Travel fellowship from World Leish Organization to attend the 6th World Congresson Leishmaniasis held at Toledo, Spain

Nipa Basak Newton-Bhabha PhD Placements Award by the Department of Science &Technology and British Council to visit King's College, London, UK Best poster award at the 4th International Congress on Epigenetics & Chromatin”held during September 03-05, 2018 in London, UKFull bursary for “WGC Advanced Course: Next Generation SequencingBioinformatics” during October 07-13, 2018 at Wellcome Genome Campus, Hinxton,UK

Best Poster award 24th National Magnetic Resonance Society Meeting held at IISER,Mohali

Sneha Paturi

Satya Brata Routh Indian National Science Academy - INSA MEDAL for Young Scientists 2018  

Sreetama Pal Best Poster Award at the international conference "Recent Advances in MolecularSpectroscopy : Fundamentals & Applications in Materials and Biology" University ofHyderabad, India

Satyajeet SalunkeBest Poster presentation at the XLII All India Cell Biology Conference of IndianSociety of Cell Biology, held at BITS Pilani, K.K.Birla Goa campus, India in Dec, 2018

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Mazeed Mohd.  Best Poster Award at the 24th Congress and General Assembly of the InternationalUnion of Crystallography, IUCr-2017, held at Hyderabad International ConventionCentre, India

Komal Ishwar Pawar Best Poster Award at the 11th AARS IUBMB Focused Meeting on   Aminoacyl tRNASynthetases, held at Florida, USA

Santosh Kumar Kuncha Best Oral Presentation at 9th RNA group meeting held at BHU, Varanasi, IndiaDST-DFG Award for participation in the 68th Meeting of Nobel Laureates, Lindau,Germany

Suraj S Nongmaithem Award for best Short Talk from Indian Society of Human GeneticsDr S S Agarwal Young Scientist Award from Society of Indian Association of MedicalGenetics

Meraj Ahmad Award for best Short Talk from Indian Society of Human Genetics

Lovejeet Kaur Abstract accepted for oral presentation at the 5th International Vitamin Conference2018, Sydney , Australia

Shanti Swaroop Srivastava Ratna Phadke Award of Indian Biophysical Society (IBS), Annual Meeting at IISER -Mohali, IndiaSelected as Fulbright-Nehru Fellow to work in USA (Aug 2018)

Radhika Khandelwal Carl Storm International Diversity (CSID) fellowship from Gordon ResearchConference (GRC) to attend GRC-Calcium Signaling Conference at RenaissanceTuscany Il Ciocco Lucca (Barga), ItalyDST-DAAD visitor (Nov 2018) to the University of Oldenburg, Germany

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Pratibha Bhalla Travel grant for “15th Asian Conference on Transcription”  held at Penang, Malaysia

Sadiya Parveen Young Scientist Award for the year 2017 by Telangana Academy of Sciences

Shagufta Khan Selection for poster presentation entitled“Transgenerational Epigenetic Inheritancevia the Male Germ Line in Drosophila melanogaster”at Epigenetics and Chromatinmeeting going to be held at Cold Spring Harbor Laboratory, New York, USA Travel award of ICMR, DBT and CSIR to present her work in Epigenetics andChromatin meeting going to be held at Cold Spring Harbor Laboratory, New York,USA (11th – 15th Sept 2018)

Fathima Athar Presentation of poster entitled “Simple Sequence Repeats (SSRs) – Guardians o theChromatin Galaxy” at the Annual Meeting of International Society for Stem CellResearch (ISSCR) held in Melbourne, Australia

Rahul Sureka Presentation of poster entitled “Evolutionary Conservation of Nuclear MatrixProteins” at EMBO Conference Series on Nuclear Structure and Dynamics held inL’Isle sur la Sorgue, France

Gopal Kushawah Presentation of poster entitled “Functional Analysis of Extremely Conserved Non –Coding Sequences in Zebrafish” at the EMBO – EMBL Symposia: The Non – CodingGenome held in EMBL Heidelberg, Germany

Divya Tej Sowpati Oral presentation entitled “C-State: An Interactive Epigenome Browser” at theEuropean Conference on Computational Biology (ECCB) held in Prague, CzechRepublic

Anand SharmaDST-DAAD visitor (Nov 2018) to the University of Oldenburg, Germany

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Ajoy Aloysius Platform Presentation award at ICCB at Hyderabad, India in Jan 2018 on “Quietlychanging partners: Smad3 replaces β-catenin in Tcf/Lef transcriptional activationin quiescent muscle stem cells” DST-SERB Travel award to present a poster at the European Wnt Meeting inHeidelberg, Germany (Sept, 2018)

Swetha Sundar Travel grant by the organizers to attend Advances in Stem Cell Biology course inApril 2018 at Institut Pasteur, Paris, France

Lamuk Zaveri ISSCR Travel Award to attend International Society of Stem Cell Research annualmeeting in Australia, June 2018, to present a poster “Oct4 and KLf synergize to targetcell cycle regulators during reprogramming”

Asmita PawarAwarded EMBO Travel Grant for attending ‘EMBO mPEPC1’ course at EMBL,Germany (Sept 2018)

Ashish JhaScholarship to attend Advanced Field course in Ecology & Conservation atXishuangbanna Tropical Botanical Garden Chinese Academy of Sciences, YunnanProvince, China

Debarya SahaEMBL Travel award to attend the EMBL Conference on Transcription andChromatin in Heidelberg, Germany

Parijat SarkarSun Pharma Science Scholar Awards-2018 in Biomedical Sciences andPharmaceutical Sciences

Sujoy DebBest Poster Award at the International conference on Genome Architecture and CellFate Regulation held at University of India, Hyderabad, India Dec, 2018

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A ParamasivamTravel award from the American Society of Human Genetics (ASHG) to attendASHG Conference 2018, San Diego, USATravel award from the European Society of Human Genetics (ESHG) to attendESHG Conference 2018, Milan, Italy

Chhavi DawarAwarded GYAN scholarship to attend 8th International Nextgen Genomics, Biology,Bioinformatics and Technologies Conference (NGBT 2018), Jaipur India.Received "Nature Genetics Best Poster Prize"

S ManuNational Geographic Early Career Grant (NatGeo Young Explorer Award) US $5000for covering field expenses

Parna SahaTravel award of SERB to present her work at EMBL Conference: Transcription andChromatin, EMBL Heidelberg, Germany (2018)

Avinash SrivastavaTravel award of DBT, ICMR to present his work at EMBL Conference: Transcriptionand Chromatin, EMBL Heidelberg, Germany, 2018

Sohini DebBest Poster Award at the 59th Annual Conference of Association of Microbiologistsof India & International symposium on Host-Pathogen Inteeractions at University ofHyderabad, India

Pankaj KumarReceived Gordon Research Conferences’ GRC Carl Storm International Diversity(CSID) Award and the ICMR travel Grant to attend the Gordon ResearchConferences on Drug Resistance held at Bryant University in Smithfield, RI, USA

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Events

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CCMB organizes multiple talks,workshops, meetings and

symposia that benefits not onlythe researchers at CCMB but thelife science community , at large

in the city and beyond.

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International Congress of Cell Biology 2018

From Jan 27th-31st, 2018, CCMB hosted ICCB 2018 with about 1200 participants. Thefive day meeting saw 2 curtain raiser talks, 41 main symposia talks, 58 mini symposiatalks, 58 oral student talks and 330 posters.

Clockwise: Jennifer Lippincott (in left) and Martin Chalfie (in right) delivering keynotelectures at ICCB 2018. Participants in an engaging poster session during the conference

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Besides, the following satellite sessions were also organized:

Pre-congress session on Cell Biology EducationHyderabad Science Lecture on “GFP: Lighting Up Life”  by Prof. Martin Chalfie, NobelLaureateScience Outreach Program for School Children (Classes IX to XII students interestedin Biology) and Biology teachersScientist-Clinician meet on the merits and need of connecting scientific fraternitywith clinical care in the age of molecular medicineBiotech Start Up Synergy Session – Inaugurated by Y.S Chowdary, Hon’ble Ministerof State for Science and Technology and Earth Sciences, Govt. of IndiaScience policy session designed and moderated by Shahid Jameel, Wellcome Trust –DBT India AllianceAll videos of interviews of speakers, students’ views have been uploaded on theofficial YouTube channel of CCMB.https://www.youtube.com/channel/UCura12DSJisJl3GolbJrLyA

The 43rd Annual Meeting of Indian Society of Human Genetics was organized andheld at CCMB on Mar 12-14, 2018.  The meeting was attended by 186 students andresearchers with talks delivered by 44 speakers.

Annual Meeting of Indian Society of Human Genetics

Convening the meeting at CCMB

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Indian Zebrafish Investigators Meet (iZIM 2018) was organized and held at CCMB onJul 3rd-4th, 2018. It is a biennial meeting held aiming to bring the growing number ofzebrafish researchers in India together to form a community. 76 participantsincluding 26 faculty members from various research institutes and universities in thecountry participated in the meeting.

Indian Zebrafish Investigators Meet 2018

Attendees of iZIM 2018

AIC-CCMB, in partnership withHumane Society of India(HSI) hostedthe Future of Protein Summit on Aug24th, 2018. The meeting was attendedbyfood based startups, industries,research institutes, academics andpoliticians to explore and discuss thenon-animal sources of protein in food.The meeting was attended by MsManeka Gandhi, Union Minister ofWomen and Child Development whostrongly advocated for the cause.

Future of Protein Summit

Snapshots from the summit

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LaCONES-CCMB organized a week long residential course on CommunicatingConservation Research with Dr Asad Rahmani, former Director of Bombay NaturalHistory Society of India. The course focused on training students on different forms ofcommunicating wildlife research for different audience. The course was attended bystudents in wildlife research all across the country.

Course on Communicating Conservation Research

Attendees of the workshop

CCMB co-organized the 2nd National Postdoc Symposium with NCBS and inStem,Bangalore between Oct 3rd-5th, 2018. The symposium was attended by 70 postdocsfrom research institutes and universities across the country. The symposium,sponsored by IndiaBioScience and Wellcome DBT India Alliance, gave the attendees afertile networking and mentoring platform, sessions on honing their skills andexploring career options.

National Postdoc Symposium (NPDS 2018)

The postdoc organizers of the NPDS 2018

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Harsh Vardhan, Union Minister of Science and Technology, Earth Sciences andEnvironment, Forest and Climate Change inaugurated the National Wildlife GeneticResource Bank at LaCONES-CCMB on Aug 12th, 2018. It plans to work with zoos in thecountry to collect genetic samples from their animals and build a repository.

National Wildlife Genetic Resource Bank dedicated to the Nation

LaCONES-CMCB in partnership with Telangana Forest Department, Central ZooAuthority and Nehru Zoological Park, Hyderabad conducted the first ever plannedreintroduction of Indian mouse deer (or the spotted chevrotain) into thewild.Following seven years of breeding program, 230 individuals were raised from 6.The first batch of these animals were released into Farahabad range of AmrabadForest Reserve on Aug 12th, 2018. Dr Harsh Vardhan flagged the first set of animals.

Reintroduction of Indian mouse deer into the wild

Harsh Vardhan inaugurating the National Wildlife Genetic Resource Bank (left), taking a look at thebiological sample stored in the bank (right)

An Indian mouse deer bred in Nehru Zoological Park, Hyderabad

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The 2nd Founder’s Day – SciSetu was celebrated on Feb 22nd, 2018 to commemoratebirth anniversary of CCMB's Founding Director, PM Bhargava. The day was celebratedwith talks from CCMB’s PhD students and alumni. Alumni Aravind Penmatsa, now atMBU, IISc, Bengaluru and Rachana Tripathi, founder of RAS Life Sciences were invitedto share their career stories.

Founder's Day Celebrations

It was followed by the Founder’s Day lecture byArun Grover, Vice Chancellor, Panjab University-the Chief Guest for the Founder's Day celebrations.His talk was titled ‘Nucleation of Higher Educationand Research in Pre and Post Independent India: APersonal Perspective’. In the talk, he gave an insightinto how the higher education space developed inIndia over the last last century.

Left: Aravind Penmatsa with Rakesh Mishra, Director, CCMB, Right: Rachana Tripathi,with Ghanshyam Swarup, scientist, CCMB

Arun Grover delivering hispublic lecture

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Each year, CCMB celebrates itsFoundation Day on Nov 26th.This year the well-known Indian spacescientist, Kopillil Radhakrishnan, formerhead of Indian Space ResearchOrganization was the Chief Guest at thecelebrations. He interacted with thescientists and students at CCMBdiscussing their work and noting thefacilities at CCMB. It was followed by his public talk on Indiaand the New Space Age, wherein heemphasized on the role of an institutionlike ISRO can play, and collaborate withother reseach partners in initiating newerresearch programs. The CCMB AnnualReport 2017-18 was also released on thisday.

Foundation Day Celebrations

Kopillil Radhakrishanan releasing CCMB's Annual Report with scientists at CCMB

Kopillil Radhakrishanan deliveringhis lecture

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Junior Civil Court Judges from Telangana and Andhra Pradesh visited CCMB andLaCONES-CCMB on Jul 16th and Dec 5th, 2018. These meets aim to initiate discussionsamong researchers and young judges to understand technologies that aid in betterjudicial decision making, like DNA fingerprinting and universal primer technology.

Junior Civil Court Judges and IFS officers visit CCMB

140 Indian Forest Service (IFS) officers visited LaCONES-CCMB on 5th Oct, 2018 for a weeklong program. The workshop aims to prepare these officers with the skills on how theyshould handle the wildlife samples to be sent for forensic studies.

Civil Court judges at CCMB on Dec 5th, 2018

IFS officers at LaONES CCMB on Oct 5th, 2018

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CCMB has signed an MoU with Andhra Pradesh Centre for Advanced Research onLivestock (APCARL) to provide technical inputs and support for the following:1. Functionalize the Animal House and Biosafety labs at APCARL2. Set up a Skill Development Program3. Set up a Food Safety Laboratory

Exchange of MoU with APCARL

CCMB Director Rakesh Mishra with Hon'ble Chief Minister of Andhra Pradesh,Chandrababu Naidu (second from right) at the MoU signing

An MoU was signed with Chhattisgarh Institute of Medical Sciences (CIMS) on MissionMode Project on Sickle Cell Anemia (SCA) in Feb 2018. The MoU aims to reduce theburden of SCA in Chhattisgarh with the help of expertise of both the institutions.

Exchange of MoU with Medical Institutes

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CCMB Director, Rakesh Mishra attended a private lunchtime meeting with Rt HonDavid Cameroon, Former Prime Minister of the United Kingdom to explore theopportunities that await India through integration of   genomics and geneticmedicine into medical practice and acceleration of this medical revolution for allIndians. The meeting held on Jul 19, 2018, in Kolkata, focused on  integrating andputting to best use clinical genomics in India. In addition, multiple international science delegations have visited CCMB overthe year, including from Spain, Japan and Germany.

Meeting with International Diplomats and Delegations

Rakesh Mishra, Director, CCMB with DavidCameroon, former Prime Minister, UK

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Atal Incubation Centre – CCMB at iHUB organizes Café Mandala - regularmeetings aimed to build a peer community for the incubatees and encouragenetworking and mentorship outside of the incubator. Below are the talks andsessions that we were organized in the last one year:

 Prof. D. Balasubramanian talked about “Opportunities and Imperatives -Biotech inIndia” on April 16, 2018Lift-Off : A journey from idea to prototype – Start ups journey & their plans forFuture on May 11, 2018Fundraising - How to charm VCs : An informative session by 50K Ventures on July18, 2018

Cafe Mandala at iHUB

From the Fundraising - How to charm your VCs session

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Dagar at iHUB

Atal Incubation Centre – CCMB at iHUB organizes Dagar - workshops to trainyoung entrepreneurs in various skills related to procure funding and understandregulations better. Below are the workshops that were held in 2018-19:

How to write BIG applicationsBusiness Induction Workshop for life sciences/healthcare startups on Oct 25,2018

From the Business Induction Workshop for Life sciences/Healthcare startups session

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Outreach

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CCMB actively reaches out tostudents, educators and general

public through various platforms.It aims to support the educationalsystem through online and print

content generation as well ashands-on events and interactive

discussions.

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Outreach

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Jigyasa – an annual Hindi magazine

CCMB releases Jigyasa – an annual Hindi magazine on cutting edge topics in lifesciences. The last Jigyasa edition that was released was themed on ‘Adhunik JeevVigyan ke Ubharte Kshetra’ (the Upcoming Areas in Life Sciences). 

Cover page of Jigyasa 2018

CCMB actively tries to reach and inform young students in schools and colleges aswell as the general public about its research through its outreach arm. The differentactivities of 2018 are as follows:

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Open Day at CCMB

CCMB opens its gates to all on Sept 26th each year to commemorate the CSIRFoundation Day. Last Open day in 2018 saw more than 11,000 visitors who weremainly school and college students and educators. The visitors get to go aroundCCMB watching exhibits based on the research being done here and interactingwith active researchers. There were also booths to talk about career opportunities inlife sciences, to sell popular science books and merchandise that talk about work atCCMB. The forum was also used by two of the local colleges to showcase how theyhave been using Foldscope, a pocket paper micropscope in their classrooms.

Clockwise: Student visitors going throughexhibit on model organisms used in lifescience research, DNA fingerprintingtechnology developed at CCMB; Seeingmicroscopic objects through Foldscopp; Hindipopular science magazine from CCMB on sale;Folders and greeting cards based on CCMB'sresearch work on sale

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What the Science - Science videos on YouTube

During the Open day in 2018, CCMB collected questions from its visitors on aquestion board. These questions typically reflected what the visitors would haveliked to understand better in life sciences. Using them as the primary cue, CCMBnow has a video series on YouTube called the What the Science. The playlist can be found at https://www.youtube.com/playlist?list=PL6FAIj7XldHtgWriON8lGo2GudXSOsbxK

The questions collected at the Open day from the visitors

CCMB Daak - Monthly newsletter from CCMB

CCMB has initiated its monthlynewsletter - CCMB Daak which helpspublic to stay updated with theresearch and events at CCMB. Thisnewsletter is circulated through emailand CCMB's social media handles.

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Superheroes against Superbugs (SaS)

Superheroes against Superbugs (SaS)is a program, funded by Wellcome DBTIndia Alliance to sensitize public onthe causes and effects of antibioticresistance. In the first leg of theprogram, it has focused on reachingout to and creating champions for thecause among high school students.CCMB has worked on SaS indeveloping the content for itsworkshops, and has also helped toconduct the workshops/ disseminatethe information through school fairsand festivals, its own Open day.

Clockwise, from top: Students at Telangana Social Welfare Residential School,Gowlidoddi participating in the SaS workshop; TSWRS students with their takeaways in form of comics they developed; Dr Raghunand Tirumala, scientist, CCMBinteracting with students at SaS workshop at Global Edge School, Madhapur; RahulSureka, PhD student, CCMB talks about antibiotic resistance at CCMB Open day;CCMB PhD students perform a skit for KV students during the antibiotic resistanceawareness week; Interaction with parents and teachers at the Global Edge Schoolsart festival in their Kokapet campus.

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Partnering with other educational initiatives

With Ajahn Educational Foundation and Citizens’ Action for Local BiodiversityAwareness and Conservation (CALBAC), CCMB hosted 250 school students fromlower income schools in Hyderabad for 5 days as a part of the program - Adhbhuta.During this program sessions were organized on the following topics:- Cells as Living Machines - Why Save Tigers?- Antibiotic Resistance - Protecting Local Birds

Left: Students working on making a sparrow house; right: Students with their workfrom the Cells as Living Machines session where they conceptualized the nervoussystem as a computer and with their sparrow house.

Sci-Setu - A bridge between students in CCMB and local colleges

CCMB PhD students run a program called the SciSetu where they visit localcolleges, interact with their students. They discuss topics like what pursuing a PhDmeans, research at CCMB and the different career opportunities that open up witha degree in life sciences.

Left: PhD students from CCMB at alocal college, right: students from alocal college attending the Sci-Setusession

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Project Abhilasha - An undergraduate students mentoringprogram

PhD students at CCMB mentor undergraduate students from local colleges onunderstanding scientific method of thinking through the Project Abhilasha. In thepilot run of this program in 2018-19, the undergraduate students were trained inunderstanding scientific method of thinking by dissecting a research paper.Through the process the undergraduate students were trained in developinghypotheses, building experiments to validate the hypotheses and inferringobservations. As a final outcome the undergraduate students who were a part of thisprogram presented a research publication in form of a poster, Powerpointpresentation as well as through a skit.During these months of mentoring, the college students also had interactive sessionswith scientist and startups at CCMB to understand the different kinds of careeroppotunities that open up with research.

Top: Undergraduatestudents from differentcolleges in a cityattending a session bySudar Olli, cofounder ofVirupaksha Life Sciencesat AIC-CCMB; Below:Amentee of ProjectAbhilasha explaining aresearch paper through aposter to a CCMBscientist

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To create awareness about science research among the students of grades VIII, IX andX, and motivate them in choosing scientific research as a potential career option infuture, CCMB conducts Young Innovators Program (YIP) each year. Dr Harsh Gupta,scientist, CSIR-National Geophysical Research Institute inaugurated the programwith a talk on India's success in predicting tsunamis. Of 105 students who attendedthe talk, 24 students were selected based on a written screening test. These studentsgot two weeks of hands-on training in labs and interacted with research facultymembers of CCMB to develop their skills and attitude in science.

Young Innovators' Program

Top: YIP participants in alab session, Below: YIPparticipants in adiscussion with NMadhusudhana Rao, CEOat AIC-CCMB

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New Capabilities

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CCMB is growing itsinfrastructural capacities as well

as keeps up with cutting edgeresearch by designing its

research programs accordingly.

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Research Facilities

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MSM System 400 Yeast Tetrad Dissection  Microscope,Rs.30 lakhNGS Facility: Novaseq 6000 system, Rs.920 lakhHigh performance Flow cytometer for Stem cellsorting with Bio-Safety cabinet Class-II, Rs.250 lakhInfrared western blotting system,  Rs.40 lakhHigh End Motorised Binocular Inverted Microscopewith DIC, Rs.32 lakhHigh sensitive spectral confocal system, Rs.180 lakhMetasystems Flourescence Microscope [Upgradation],Rs.23 lakhFour Channel AVANACE NEO 600 MHz NMR Console,Rs.380 lakhInverted Microscope with DIC, fl. attached, 2 CCDcameras, Rs.32 lakh

The following instruments/facilities have been procured at CCMB:

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Infrastructural Facilities

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The following infrastructural facilities have been built at CCMB:

A 60 seater lecture hall cum class room has beenconstructed on the iHUB terrace, to be used forSkill Development ProgramsCivil renovation work has been done in 12 flatsof SC-1 quarters for Skill Development Programs(can provide accommodation for 36 persons).The groundwork has begun for a multipurposelecture hall in CCMB campus, with an approvalof Rs 10 cr from CSIR.All molecular diagnostic services are centralizedat iHUB and processes for sample collection toreport generation have been streamlined. Theseare managed through ASPIRE (CCMB’s Sec.8company).Dedicated staff has been identified as in-chargeof diagnosticsA medical doctor and technical assistants havebeen recruited for the genetic analysis module.

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A new multipurpose lecture hall complex approved by CSIR

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CCMB has obtained CSIR's approval to build a multipurpose lecture hall complex.The complex will have an auditorium with a seating capacity of 350 persons, alecture hall for 100 persons, two mini lecture halls for 50 persons each and twocommittee rooms for 30 persons each. In addition, it will have a lounge and posterpresentation area.

An artist's impression on the multipurpose lecture hall complex

Online students' portal

CCMB has developed an online students' portal for taking care of all theiradministrative needs. Students can raise their issues and concerns on the portal andseek quick redressal.

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Scan the QR code and subscribe to ournewsletter, CCMB Daak- an easy way tostay updated with us.

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CSIR - Centre for Cellular and Molecular Biology(Council of Scientific & Industrial Research)

Uppal Road, Habsiguda, Hyderabad - 500 007,Telangana, India

Ph : 040 2716 0222-41     Fax : 040 2716 0591

email : [email protected] : www.ccmb.res.in

ccmbcsir ccmb_csir CSIR-Centre forCellular and

Molecular Biology

Centre for Cellularand Molecular

Biology

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