cc+/ir+ cc+ ecm+ sr+ ir+ - link.springer.com10.1186/gb-2007-8-8-r157/... · aip ndufv1 np ssr4...

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CC+/IR+ CC+ ECM+ SR+ IR+ LMCD1 FER1L3 FHL2 PDLIM3 INHBB GLRB ACVR1 PDGFC TPM4 GAS1 CTGF CALD1 PLS3 LGALS1 PLAU NNMT RAB31 D2S448 EMP1 COL6A1 COL5A1 LAMB1 ADAM12 ADAMTS2 WISP2 PDGFRL DACT1 THBS2 FBN1 NID2 PRSS11 SPARC COL5A2 COL3A1 NDN MGC3047 DCN CDH11 MMP11 EDIL3 AHNAK COL15A1 SPARCL1 SLIT3 TBX2 SLCO2A1 EPAS1 CRY2 EDG2 CLIPR-59 FY ADH1B KLF2 CST3 OLFM1 SLCO3A1 RHOBTB2 KIAA1036 IFITM2 MVP AXL MAFB PRRX2 HCFC1R1 LGALS3 CXX1 PURA FLJ10357 TRO ID1 SOD3 GSN CNN2 LIMS2 ACTA2 DOCK1 IF PPAP2B PTPRM FCGBP AGTPBP1 STXBP3 VPS13A PHIP ZRF1 SSB ZNF146 EIF5B BAZ1A DIAPH2 UBP1 CKLFSF6 ZNF198 KIAA0907 GALNT1 KIAA1012 IMPACT ATP1B1 FLJ10300 KIAA0663 NUCB2 TRIP11 GOLGB1 ZNF302 NDUFA5 MAP4K5 SCFD1 WBP5 TCTE1L LEPROTL1 ZNF200 ARPC3 CGI-116 PDCD10 NDUFB5 CKLF COMMD8 PHF3 ECHDC1 MMRP19 EIF4A2 COPB2 MRPL3 MBD4 ATR UBE1C RBMX2 CAT UROD RPL35A NDUFA1 UQCRB MRPS33 MRPL33 COX7A2 COX5B CALM3 LARS2 NDUFB8 RPS9 RPL22 FAU RPS3 RPS15 RPL36 RPS17 RPL4 RPS29 RPL37 LOC51035 PDE6B RREB1 NAV1 PPYR1 PIP5K2A PRKACA LIMK1 ZHX3 PER1 LOC58486 IPO7 IRX4 NUDT11 TXNL4B MGC26885 MBC2 GLB1 CALM1 AP3D1 POLR2E HMOX2 STUB1 CLN3 FLJ13868 FHOD1 ERBB2 CLCA2 MGLL APOD DUSP6 FZD4 ICA1 CYB5 PIP TFAP2B FOXA1 AR TNRC9 LOC400451 GALNT7 KIAA1324 NPDC1 TM4SF13 TM4SF15 AZGP1 GPRC5C SLC9A3R1 QP-C GSS NQO1 SEPHS2 CTNNBIP1 PON2 GSR SLC1A4 PDCD8 FLJ22390 ATP6V1G1 COX6A1 HYPK TMEM4 NANS AKR1A1 DUSP5 GMPR2 EIF2B2 KLHDC2 RPL36AL LTF PYCARD BF AFTIPHILIN TTC9 GATA3 RARRES3 S100A7 S100A8 S100A9 MPHOSPH6 KYNU HSPA5BP1 KLF8 CSTF3 DDX42 FTSJ3 MLSTD1 DHRS4 PCK2 FRG1 SH2BP1 CAMLG BTF3 TINP1 ZNF226 DHX29 SDCCAG1 KTN1 MID1IP1 HMGCL ICMT AP3S1 WDR41 FLJ10579 CYB561D2 GALNT10 EPLIN LRP10 CD63 ZAP128 IGBP1 FBP1 BLVRA IDH1 PHKB RNF11 BZW1 KIAA1598 RNF103 MYO5C HNMT CD164 MCP SC5DL TGFBR1 GTF2H2 ABLIM3 FLJ20195 SLC35D1 HIPK1 DHFR MRPS27 HMGCR EIF5A2 MRPS31 TPT1 NRIP1 TBK1 IFNGR1 KIAA0433 DDX26 AP2A2 ALDH2 MYCBP2 ARF4L RGS20 GP1BB SMTN DRD1IP H1F0 EIF4G1 MARK2 STRN4 PR48 DNCLI2 CGI-128 DRG2 CIB2 DAAM1 PPP1R1A SASH1 CLMN NESG1 DECR2 NME4 SOX11 DNMT3B GNA11 KIAA0284 QPRT ORMDL2 SRP54 DUSP4 MGAT4A DGCR2 KIAA0672 S100P PTK6 CKMT1 DHRS7 CX3CL1 DEFB1 NALP2 IGFBP2 DDEF1 SYNE2 HNRPH1 JUNB ZFP36 EGR1 DUSP1 APG4B QARS ZNHIT1 PPP2R2D ESRRA PET112L GPX4 ATP5D TOM1L2 KIAA1068 POLR2L SEPW1 LOC51760 P2RY2 GAMT KIAA0644 ALDH4A1 CRAT GLI3 NFIA PER2 ATP5G2 S100A14 VAV3 ENPP1 MYB DNALI1 TFF3 PIB5PA GSTM3 BNIP3L MYLIP CTDSPL TMEM16A RGS5 SEMA3C FLJ20366 PLK2 DPP8 AQR NR3C1 CENTA2 IFI16 TNFRSF14 CLIC2 RGS1 AP1S2 CTSZ GPR171 TRIM22 CD69 PLAC8 ADAMDEC1 CD2 FGL2 PTPRC PLEK ITGB2 CD53 IL10RA CXCR3 GZMB CD3G GLRX FYB CTSC ALOX5 LILRB3 LILRB2 SLC7A7 IFI30 CCL4 TLR2 HLA-DPB1 C3 CTSH LY96 AIF1 SAMSN1 HLA-DRB1 HLA-DRB5 HLA-DRA C1QA HLA-DQB1 HLA-DPA1 RUNX3 LCP1 NFKBIA CXCL13 STAT1 CXCL10 TAP1 CXCL9 UBD PSME2 PSMB10 APOL3 HLA-G HLA-A HLA-F HLA-B NMI PLSCR1 XCL2 ADA DAPP1 UBE2L6 IRF7 FLJ20035 SP110 ISGF3G ISG20 IFITM1 C1ORF29 IFI44 IFIT1 G1P2 MX1 IGLL1 TNFRSF17 PACAP IGLC2 PIM2 SCAP1 CD28 LY9 ARHGDIB STARD7 ZBTB5 PRAME LTBP1 COPG2 ARHGEF10 PTMA ACTG1 FLJ10597 HGS PSCD1 PRPSAP1 DDX48 CDK2 PSMB1 PGM3 NET1 GDI2 PRKCI NCBP2 FXR1 PARG1 CNN3 GCLM COPB CHSY1 RAI14 SPP1 ARHE FAM3C RTCD1 HNRPU PRKAR2B RANBP2 AXOT TCFL5 WBSCR1 ALDH9A1 NARS MAOB ARNT2 FLJ11196 CSRP2 TUSC3 HDAC2 SYNCRIP NFIB ASF1A ZFR CDK2AP1 PAPSS1 IVNS1ABP HTATIP2 NFE2L3 DKC1 LDHB RNPS1 TRAP1 PSMD4 UBE2Q HDGF CKS1B ILF2 RRS1 PAPD1 CDKN2A WDHD1 SNRPD3 NASP HMGB2 FLJ10292 UCHL5 VRK2 SSRP1 MCM3 FLJ10156 TYMS KNTC2 STMN1 CTPS CDC20 CDCA8 KIFC1 CHAF1A DHX9 GART RARRES1 PROM1 GABRP VGLL1 KRT23 TM4SF1 MMP7 KLK6 PAK1IP1 GFOD1 PRKX LYN MSN CHI3L2 RELB SOD2 KRTHB1 KCNN4 C6ORF18 RNF5 MEA SNRPC RDBP LRRN5 ING4 FOXD1 ATP6V1B1 TRIM2 SERPINB5 CP SLC16A3 IL1RAP SERPINA3 CD59 CEBPD TUBB4 TUBB SLC2A1 LAMB3 KRT5 KRT17 BAG2 PLOD S100A6 RGS2 PLA2G4A NMB TCF7L2 SIAT4C GSTP1 EN1 ACTG2 MID1 COL9A3 FZD7 CRYAB MIA SFRP1 PABPC1 YWHAZ RAD21 TCEB1 LACTB2 TERF1 CGI-12 DDIT4 NDRG1 AARS TPI1 GAPD NHP2L1 BZRP POLR2F PTPLB UBE2V2 LYPLA1 PSPH BANP G10 TIMM9 ERH NPM1 CDC23 HSPA9B SNRPF DPP3 MYCBP CGI-121 RPA3 LSM5 HBXIP DKFZP564B167 LOC54499 PRSS15 NME1 PYCR1 RFXANK DDX39 RNASEH2A PAICS HSPD1 SNRPD2 AHCY NDUFS5 NMU RFC4 ACTL6A PCNA CKS2 MCM2 UNG GMPS KPNA2 RAD51 SRPK1 SNRPA1 GMNN KIF11 PDHA1 HSPA14 SEPHS1 GTPBP4 PFDN2 MRPS17 GGH RRM2 TXN BM039 DC13 FH TBCE TOMM20 NUP133 SRP9 SNRPE FBXO28 CGI-115 FLJ10326 SMYD2 PMM2 USP7 DDB1 BCKDK PREB SEC61A1 DTYMK PPP1R7 APEX1 HNRPAB HSPCB SURF2 FLJ10349 ZNF593 DGCR6 DDT APRT HSPC176 NUDT1 GUK1 MRPL23 APLP2 EI24 ADK HK1 MT2A MT1G VDR ZDHHC7 WSB2 FBXO21 SMS KIAA0143 WDR1 MAEA ABL1 ODF2 MTCBP-1 SH3YL1 RBM30 FLJ20436 HSRTSBETA REPIN1 PAXIP1L MYST1 DVL1 ZNF239 DAP3 YAP ARMCX2 POLR3E BFAR CKB DERP6 AIP NDUFV1 NP SSR4 BCAP31 OVOL1 PRKR OPRS1 MCCC1 FABP7 TLE1 EBP FADS2 RPS2 ACTB CFL1 DNASE2 ARPC1B RNASET2 VPS28 SIAHBP1 EXOSC4 CYC1 HSF1 EEF1D SCRIB CYHR1 SFRS8 ARL6IP4 RAB35 ADAM8 CDC25B TRIF TFG DAP UQCRC2 FLJ12806 ZNF207 HSA9761 BACH DRAP1 PRPF31 UBE2S GPI HIST1H2AK HIST1H2BJ HIST2H2AA HIST1H2BD FGF13 SDC1 KIAA0251 MAP7 HSBP1 HEBP2 CBR3 HMGN1 HIST1H3A H3F3A HIST1H3J BZW2 JARID1B ITPR3 PSMD1 XRCC5 HNRPF ANK3 CCDC6

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hclust (*, "complete")

CC+/IR+ CC+ ECM+ SR+ IR+

LMCD1FER1L3

FHL2PDLIM3INHBBGLRB

ACVR1PDGFC

TPM4GAS1CTGF

CALD1PLS3

LGALS1PLAU

NNMTRAB31

D2S448EMP1

COL6A1COL5A1LAMB1

ADAM12ADAMTS2

WISP2PDGFRL

DACT1THBS2

FBN1NID2

PRSS11SPARC

COL5A2COL3A1

NDNMGC3047

DCNCDH11MMP11

EDIL3AHNAK

COL15A1SPARCL1

SLIT3TBX2

SLCO2A1EPAS1CRY2EDG2

CLIPR-59FY

ADH1BKLF2CST3

OLFM1SLCO3A1RHOBTB2KIAA1036

IFITM2MVPAXL

MAFBPRRX2

HCFC1R1LGALS3

CXX1PURA

FLJ10357TROID1

SOD3GSN

CNN2LIMS2ACTA2

DOCK1IF

PPAP2BPTPRMFCGBP

AGTPBP1STXBP3VPS13A

PHIPZRF1SSB

ZNF146EIF5B

BAZ1ADIAPH2

UBP1CKLFSF6

ZNF198KIAA0907

GALNT1KIAA1012

IMPACTATP1B1

FLJ10300KIAA0663

NUCB2TRIP11

GOLGB1ZNF302

NDUFA5MAP4K5

SCFD1WBP5

TCTE1LLEPROTL1

ZNF200ARPC3

CGI-116PDCD10NDUFB5

CKLFCOMMD8

PHF3ECHDC1MMRP19

EIF4A2COPB2MRPL3MBD4

ATRUBE1CRBMX2

CATUROD

RPL35ANDUFA1UQCRB

MRPS33MRPL33COX7A2

COX5BCALM3LARS2

NDUFB8RPS9

RPL22FAU

RPS3RPS15RPL36RPS17

RPL4RPS29RPL37

LOC51035PDE6BRREB1

NAV1PPYR1

PIP5K2APRKACA

LIMK1ZHX3PER1

LOC58486IPO7IRX4

NUDT11TXNL4B

MGC26885MBC2GLB1

CALM1AP3D1

POLR2EHMOX2STUB1

CLN3FLJ13868

FHOD1ERBB2CLCA2MGLLAPOD

DUSP6FZD4ICA1

CYB5PIP

TFAP2BFOXA1

ARTNRC9

LOC400451GALNT7

KIAA1324NPDC1

TM4SF13TM4SF15

AZGP1GPRC5C

SLC9A3R1QP-C

GSSNQO1

SEPHS2CTNNBIP1

PON2GSR

SLC1A4PDCD8

FLJ22390ATP6V1G1

COX6A1HYPK

TMEM4NANS

AKR1A1DUSP5GMPR2EIF2B2

KLHDC2RPL36AL

LTFPYCARD

BFAFTIPHILIN

TTC9GATA3

RARRES3S100A7S100A8S100A9

MPHOSPH6KYNU

HSPA5BP1KLF8

CSTF3DDX42FTSJ3

MLSTD1DHRS4

PCK2FRG1

SH2BP1CAMLG

BTF3TINP1

ZNF226DHX29

SDCCAG1KTN1

MID1IP1HMGCL

ICMTAP3S1

WDR41FLJ10579

CYB561D2GALNT10

EPLINLRP10CD63

ZAP128IGBP1FBP1

BLVRAIDH1

PHKBRNF11BZW1

KIAA1598RNF103MYO5CHNMTCD164

MCPSC5DL

TGFBR1GTF2H2ABLIM3

FLJ20195SLC35D1

HIPK1DHFR

MRPS27HMGCREIF5A2

MRPS31TPT1

NRIP1TBK1

IFNGR1KIAA0433

DDX26AP2A2ALDH2

MYCBP2ARF4LRGS20GP1BBSMTN

DRD1IPH1F0

EIF4G1MARK2STRN4

PR48DNCLI2

CGI-128DRG2CIB2

DAAM1PPP1R1A

SASH1CLMN

NESG1DECR2

NME4SOX11

DNMT3BGNA11

KIAA0284QPRT

ORMDL2SRP54DUSP4

MGAT4ADGCR2

KIAA0672S100PPTK6

CKMT1DHRS7

CX3CL1DEFB1NALP2

IGFBP2DDEF1SYNE2

HNRPH1JUNB

ZFP36EGR1

DUSP1APG4BQARS

ZNHIT1PPP2R2D

ESRRAPET112L

GPX4ATP5D

TOM1L2KIAA1068

POLR2LSEPW1

LOC51760P2RY2GAMT

KIAA0644ALDH4A1

CRATGLI3NFIA

PER2ATP5G2

S100A14VAV3

ENPP1MYB

DNALI1TFF3

PIB5PAGSTM3BNIP3LMYLIP

CTDSPLTMEM16A

RGS5SEMA3C

FLJ20366PLK2DPP8AQR

NR3C1CENTA2

IFI16TNFRSF14

CLIC2RGS1

AP1S2CTSZ

GPR171TRIM22

CD69PLAC8

ADAMDEC1CD2

FGL2PTPRC

PLEKITGB2CD53

IL10RACXCR3GZMBCD3GGLRX

FYBCTSC

ALOX5LILRB3LILRB2

SLC7A7IFI30

CCL4TLR2

HLA-DPB1C3

CTSHLY96AIF1

SAMSN1HLA-DRB1HLA-DRB5HLA-DRA

C1QAHLA-DQB1HLA-DPA1

RUNX3LCP1

NFKBIACXCL13

STAT1CXCL10

TAP1CXCL9

UBDPSME2

PSMB10APOL3HLA-GHLA-AHLA-FHLA-B

NMIPLSCR1

XCL2ADA

DAPP1UBE2L6

IRF7FLJ20035

SP110ISGF3G

ISG20IFITM1

C1ORF29IFI44IFIT1G1P2MX1

IGLL1TNFRSF17

PACAPIGLC2

PIM2SCAP1

CD28LY9

ARHGDIBSTARD7

ZBTB5PRAME

LTBP1COPG2

ARHGEF10PTMA

ACTG1FLJ10597

HGSPSCD1

PRPSAP1DDX48CDK2

PSMB1PGM3NET1GDI2

PRKCINCBP2

FXR1PARG1CNN3GCLMCOPB

CHSY1RAI14SPP1ARHE

FAM3CRTCD1HNRPU

PRKAR2BRANBP2

AXOTTCFL5

WBSCR1ALDH9A1

NARSMAOB

ARNT2FLJ11196

CSRP2TUSC3HDAC2

SYNCRIPNFIB

ASF1AZFR

CDK2AP1PAPSS1

IVNS1ABPHTATIP2NFE2L3

DKC1LDHB

RNPS1TRAP1PSMD4UBE2Q

HDGFCKS1B

ILF2RRS1

PAPD1CDKN2AWDHD1

SNRPD3NASP

HMGB2FLJ10292

UCHL5VRK2

SSRP1MCM3

FLJ10156TYMS

KNTC2STMN1

CTPSCDC20CDCA8

KIFC1CHAF1A

DHX9GART

RARRES1PROM1GABRPVGLL1KRT23

TM4SF1MMP7KLK6

PAK1IP1GFOD1

PRKXLYN

MSNCHI3L2

RELBSOD2

KRTHB1KCNN4

C6ORF18RNF5MEA

SNRPCRDBP

LRRN5ING4

FOXD1ATP6V1B1

TRIM2SERPINB5

CPSLC16A3

IL1RAPSERPINA3

CD59CEBPDTUBB4TUBB

SLC2A1LAMB3

KRT5KRT17BAG2PLOD

S100A6RGS2

PLA2G4ANMB

TCF7L2SIAT4CGSTP1

EN1ACTG2

MID1COL9A3

FZD7CRYAB

MIASFRP1

PABPC1YWHAZRAD21TCEB1

LACTB2TERF1

CGI-12DDIT4

NDRG1AARS

TPI1GAPD

NHP2L1BZRP

POLR2FPTPLB

UBE2V2LYPLA1

PSPHBANP

G10TIMM9

ERHNPM1

CDC23HSPA9BSNRPF

DPP3MYCBP

CGI-121RPA3LSM5

HBXIPDKFZP564B167

LOC54499PRSS15

NME1PYCR1

RFXANKDDX39

RNASEH2APAICS

HSPD1SNRPD2

AHCYNDUFS5

NMURFC4

ACTL6APCNACKS2

MCM2UNG

GMPSKPNA2RAD51SRPK1

SNRPA1GMNNKIF11

PDHA1HSPA14SEPHS1GTPBP4

PFDN2MRPS17

GGHRRM2

TXNBM039

DC13FH

TBCETOMM20NUP133

SRP9SNRPE

FBXO28CGI-115

FLJ10326SMYD2PMM2USP7DDB1

BCKDKPREB

SEC61A1DTYMK

PPP1R7APEX1

HNRPABHSPCBSURF2

FLJ10349ZNF593DGCR6

DDTAPRT

HSPC176NUDT1

GUK1MRPL23

APLP2EI24ADKHK1

MT2AMT1G

VDRZDHHC7

WSB2FBXO21

SMSKIAA0143

WDR1MAEAABL1ODF2

MTCBP-1SH3YL1RBM30

FLJ20436HSRTSBETA

REPIN1PAXIP1L

MYST1DVL1

ZNF239DAP3

YAPARMCX2POLR3E

BFARCKB

DERP6AIP

NDUFV1NP

SSR4BCAP31OVOL1PRKR

OPRS1MCCC1FABP7

TLE1EBP

FADS2RPS2ACTBCFL1

DNASE2ARPC1B

RNASET2VPS28

SIAHBP1EXOSC4

CYC1HSF1

EEF1DSCRIB

CYHR1SFRS8

ARL6IP4RAB35ADAM8

CDC25BTRIFTFGDAP

UQCRC2FLJ12806

ZNF207HSA9761

BACHDRAP1

PRPF31UBE2S

GPIHIST1H2AKHIST1H2BJHIST2H2AAHIST1H2BD

FGF13SDC1

KIAA0251MAP7

HSBP1HEBP2

CBR3HMGN1

HIST1H3AH3F3A

HIST1H3JBZW2

JARID1BITPR3

PSMD1XRCC5HNRPF

ANK3CCDC6