case study 3: ultra-low gossypol cottonseed · pdf file• toxicants and anti -nutrients:...

23
Case study 3: Ultra-low Gossypol Cottonseed FDA Patrick Cournoyer, Ph.D.

Upload: vannhan

Post on 17-Mar-2018

221 views

Category:

Documents


6 download

TRANSCRIPT

Page 1: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

Case study 3: Ultra-low Gossypol Cottonseed

FDA

Patrick Cournoyer, Ph.D.

Page 2: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

2

Elements of a submission • Basic elements • Molecular characterization • Trait stability • Added substances • Endogenous substances

– Nutrients – Toxicants, anti-nutrients

• Suitability for new uses

Page 3: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

3

Elements of a submission • Basic elements

– The intended trait – Introduced genetic element – Intended uses – New uses

Page 4: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

4

Gossypol

• Terpenoid • Toxic to monogastrics • Causes infertility in males • Insecticidal

http://udall-lab.byu.edu/Research/CottonResearch /CottonGossypolProject

Page 5: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

5

Intended trait, inserted genetic element

Sunilkumar et al., 2006

Page 6: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

6

Existing uses of cottonseed

Page 7: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

7

Page 8: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

8

Cottonseed linters

• Highly processed into pure cellulose – Food and non-food

uses • Sausage casings • Thickener,

stabilizer, source of dietary fiber – Ice cream – Salad dressing – Grated cheese

Page 9: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

9

Page 10: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

10

Page 11: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

11

New uses for cottonseed • Cottonseed hulls, cottonseed meal

– Food for animals

• Cottonseed – Food for humans and animals

Page 12: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

12

Elements of a submission • Basic elements • Molecular characterization • Trait stability • Added substances • Endogenous substances

– Nutrients – Toxicants, anti-nutrients

• Suitability for new uses

Page 13: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

13

Molecular Characterization

Characterize insertion(s), copy

number Vector Backbone?

New proteins from alternative

open reading frames?

Stability of insertion over

multiple generations?

Page 14: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

14

Elements of a submission • Basic elements • Molecular characterization • Trait stability • Added substances • Endogenous substances

– Nutrients – Toxicants, anti-nutrients

• Suitability for new uses

Page 15: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

15

Comparative Approach

Appropriate comparator

(Grown concurrently) To identify changes

Reference varieties (Grown concurrently)

To characterize variation

Published data To characterize variation

New GE variety

Page 16: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

16

Composition Resources

https://www.cropcomposition.org/query/index.html

Page 17: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

17

Composition Resources

https://ndb.nal.usda.gov/ndb/search/list

Page 18: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

18

Composition Resources

Consensus Document on Compositional Considerations for New Varieties of Cotton (Gossypium hirsutum and Gossypium barbadense): Key Food and Feed Nutrients and Anti-Nutrients

Page 19: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

19

Endogenous Substances: Key Nutrients

• Proximates – Ash – carbohydrates – crude fat – crude protein – crude fiber

• Key amino acids

• Key fatty acids

• Minerals – calcium – phosphorus

• Vitamins

– Tocopherol (vitamin E)

Page 20: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

20

Endogenous Substances: Toxicants and anti-nutrients

• Gossypol – and related terpenoid phytoalexins

• Cyclopropenoid fatty acids – malvalic, sterculic and dihydrosterculic acids – egg yolk discoloration and reduced hatchability in

chickens – possibly implicated with liver cancer in trout

Page 21: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

21

New uses

• Exposure estimates: – What are predicted exposure levels (humans and animals)? – Based on possible food uses and use levels

• Nutrition:

– Would cottonseed differ from the grains they would replace in a way that would be consequential for human or animal nutrition?

• Toxicants and anti-nutrients: – Would estimated levels of exposure be safe considering the new

uses?

Page 22: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

22

Example of new grain in human food: Canaryseed

• Developer – Canaryseed Development Commission of Saskatchewan

• Description

– Historically used only as birdseed due to silica-rich hairs – Mutation breeding eliminated hairs – Now suitable for food use

• Elements of the GRAS notification:

– Breeding approach – Compositional analysis (not comparative) – Nutrients and toxicants – Exposure estimates – Nutritional impact – Toxicological assessment

Page 23: Case study 3: Ultra-low Gossypol Cottonseed · PDF file• Toxicants and anti -nutrients: – Would estimated levels of exposure be safe considering the new uses? 22 Example of new

Thank you Questions?

Patrick Cournoyer, Ph.D.