bluespray a gis application for environmental science and natural resource management includes tools...

11
BlueSpray A GIS application for environmental science and natural resource management Includes tools for modeling: HEMI Maxent regression optimization Statistical tests AIC, AICc, BIC, Likelihood Pearson’s and Spearman’s Random dataset generation Based on OpenSource and custom code

Upload: gwendolyn-oliver

Post on 12-Jan-2016

215 views

Category:

Documents


2 download

TRANSCRIPT

Page 1: BlueSpray A GIS application for environmental science and natural resource management Includes tools for modeling: –HEMI –Maxent regression optimization

BlueSpray

• A GIS application for environmental science and natural resource management

• Includes tools for modeling:– HEMI– Maxent regression optimization– Statistical tests

• AIC, AICc, BIC, Likelihood• Pearson’s and Spearman’s

– Random dataset generation• Based on OpenSource and custom code

Page 2: BlueSpray A GIS application for environmental science and natural resource management Includes tools for modeling: –HEMI –Maxent regression optimization

BlueSpray Ownership

• Owned by SchoonerTurtles.com– Which is owned by Jim Graham

• Currently in “beta” testing• Free to beta testers• Need a passcode which changes once a

year• Plan on continuing to provide BlueSpray

at little or no cost for environmental science research academics and non-profits

Page 3: BlueSpray A GIS application for environmental science and natural resource management Includes tools for modeling: –HEMI –Maxent regression optimization

BlueSpray Expansion

• BlueSpray was build to be a platform for GIS software development:– File handlers– Transforms– “Painters”– Layer types– Tools (things you use with your “hand” like

pointers, magnifying classes, brushes, etc.)– Etc.

Page 4: BlueSpray A GIS application for environmental science and natural resource management Includes tools for modeling: –HEMI –Maxent regression optimization

BlueSpray and Java

• Runs on MS-Windows, Mac, and UNIX• Java is not slow, but programmers can

make it that way (i.e. BlueSpray is fast)• Need to have Java 7 installed• Free, OpenSource• Managed by Oracle and Java.net

Page 5: BlueSpray A GIS application for environmental science and natural resource management Includes tools for modeling: –HEMI –Maxent regression optimization

Installing Java

• Follow the instructions at www.schoonerturtles.com

• There are two versions of Java:– 32-bit: can run on 32 or 64-bit OSes– 64-bit: can only run on 64-bit Oses

• Recommended to only install one version of Java

• Install Java 3D if you want to visualize data in 3D (under development)

Page 6: BlueSpray A GIS application for environmental science and natural resource management Includes tools for modeling: –HEMI –Maxent regression optimization

Installing BlueSpray

• Download from www.schoonerturtles.com

• Uncompress the zip file• That’s it!

Page 7: BlueSpray A GIS application for environmental science and natural resource management Includes tools for modeling: –HEMI –Maxent regression optimization

Running BlueSpray• Java programs run under a “virtual

machine”– Needs to know the min/max memory– Also needs to know the location of dynamic

linked libraries (DLLs)– There are different DLLs for 32-bit and 64-

bit

Page 9: BlueSpray A GIS application for environmental science and natural resource management Includes tools for modeling: –HEMI –Maxent regression optimization

BlueSpray64.bat

• java : virtual machine• -Djava.security.policy=applet.policy

– To run applets• -Xms512m : minimum memory• -Xmx4024m : maximum memory• Djava.library.path=..\BlueSpray\

STLibraries64 – Path to DLLs

• -jar BlueSpray.jar : program to run

Page 10: BlueSpray A GIS application for environmental science and natural resource management Includes tools for modeling: –HEMI –Maxent regression optimization

Learning BlueSpray

• See the documentation that comes with BlueSpray– It’s minimum at this point– Let me know what is needed and I’ll add &

edit

Page 11: BlueSpray A GIS application for environmental science and natural resource management Includes tools for modeling: –HEMI –Maxent regression optimization

BlueSpray for Modeling

• Optimal regularization and uncertainty maps for Maxent

• Quick creation of tabular files– Extract… in attributes

• Quick conversions between points and rasters

• Statistical tests• HEMI