bid ce workshop 1 session 05 - origins of biodiversity data
TRANSCRIPT
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23 AUGUST 2016THE BID PROGRAMME IS FUNDED BY THE EUROPEAN UNION
Origins of data: examples and illustrations Sophie Pamerlon
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23 AUGUST 2016THE BID PROGRAMME IS FUNDED BY THE EUROPEAN UNION
Origines des données : exemples et illustrations
Sophie Pamerlon
![Page 3: BID CE workshop 1 session 05 - Origins of Biodiversity Data](https://reader036.vdocuments.mx/reader036/viewer/2022062901/58f2acae1a28abea5b8b459d/html5/thumbnails/3.jpg)
Checklists and other taxonomical resources
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Référentiels taxonomiques et autres listes de taxons
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Checklists and taxonomical resources
Taxon list of reference: a valid list of species/taxa present in a given area, with their hierarchy and synonyms
Red list (at national, regional or local level): a list of taxa present in a given area with their vulnerability status
Checklist: a simple list of taxa present in a given area
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Référentiels et listes taxonomiques
Référentiel taxonomique : liste valide d’espèces/taxons présents dans une région donnée, avec leur hiérarchie et synonymes
Liste rouge (nationale, régionale ou locale) : list de taxons présents dans une région donnée avec leur statut de vulnérabilité
Checklist: une liste simple de taxons présents dans une région donnée
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Specimens and natural history collection materials
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Spécimens et échantillons issus de collections d’histoire naturelle
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Specimens and materials
Preserved specimens in formol, alcohol (fishes, herpetology collections…); mounted specimens (birds, mammals, insects)
Fossils and other paleontological materials (amber, teeth, bones…); animal or vegetal samples (DNA, organs, skin, fur, faeces…)
Herbarium sheets and vegetal materials (seeds, foliage, branches, bark, dried/preserved fruits…)
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Spécimens et échantillons
Spécimens conservés dans du formol, de l’alcool (collections de poissons, d’herpétologie...) ; spécimens montés (oiseaux, mammifères, insectes...)
Fossiles et autres matériels paléontologiques (ambre, dents, os…) ; échantillons animaux ou végétaux (ADN, organes, peaux, fourrures, faeces…)
Planches d’herbier et matériel végétal (graines, feuilles, branches, écorce, fruits séchés ou conservés…)
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Literature
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Littérature
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Examples of literature documents
PhD or Master thesis
Reports and other written documents
Published or in press scientific articles
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Exemples de documents de littérature
Thèses (PhD) et rapports de Master
Rapports et autres documents écrits
Articles scientifiques publiés ou sous presse
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Fieldwork records and notes
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Notes et enregistrements de terrain
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Fieldwork records and notes
Logs, field notes with taxa observed or collected; notes about the protocol used on the field
Citizen science logs
Surveys, assessments
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Notes et enregistrements de terrain
Carnets de terrain, fiches et listes de taxons observés ou collectés, notes sur le(s) protocole(s) utilisé(s) sur le terrain
Données de sciences participatives
Enquêtes, études d’impact
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Other origins of data
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Autres origines possibles de données
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Other origins of data
Paper maps or atlas; prints of satellite pictures
Other supports: pictures, audio, video recordings
Remote sensing data: GPS, radar or satellite data; camera traps;
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Autres origines possibles de données
Cartes papier et atlas ; impressions d’images satellites
Autres supports : photos, enregistrements audio ou vidéo
Données obtenues à distance : GPS, données radar ou satellite, pièges photo/caméra
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Results of the pre-workshop questionnaire (origins of data)
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Résultats du questionnaire pré-atelier (origines des données)
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Datasets managed by the training participants (by origin of data)
Dat
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s fro
m p
artic
ipan
ts
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Jeux de données gérés par les participants à l’atelier (par origines de données)
Orig
ines
des
don
nées
des
par
tcip
ants
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Datasets managed by the training participants (by taxa)
Dat
a or
igin
s fro
m p
artic
ipan
ts
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Jeux de données gérés par les participants à l’atelier (par taxons)
Orig
ines
des
don
nées
des
par
tcip
ants
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Databases management and sharing (1 / 2)D
ata
orig
ins
from
par
ticip
ants
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Gestion et partage des bases de données (1 / 2)D
ata
orig
ins
from
par
ticip
ants
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Databases management and sharing (2 / 2)D
ata
orig
ins
from
par
ticip
ants
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Gestion et partage des bases de données (2 / 2)D
ata
orig
ins
from
par
ticip
ants
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Origins of data and Darwin Core concepts
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Origines de données et concepts Darwin Core
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Darwin Core standard: Cores and ExtensionsD
ata
orig
ins
and
Dar
win
Cor
e
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Darwin Core : Coeurs de standard et ExtensionsO
rigin
es d
e do
nnée
s et
Dw
C
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Darwin Core standard: Cores and ExtensionsD
ata
orig
ins
and
Dar
win
Cor
e
Darwin Core standard = Core of standard + possible Extensions (star schema)
Different Cores can be used depending on the origin of the data:- Occurrence Core for natural history collection specimens and field simple
observations- Taxon Core for taxonomical lists (checklists, redlists)- Event Core for sampling events (surveys, transects, quadrats, traps…)
Extensions are used for giving more details about the data:- Simple Multimedia Extension for exchanging metadata about multimedia
resources, in particular links to image, video and audio files.- Taxon Description to exchange simple text/paragraph based taxon
descriptions.- Measurement or Facts to add information about biotic and abiotic variables- Trait descriptor- Material sample- And many more!
NOTE: Some Cores can be used as extensions too, such as the Occurrence one that can be used in addition to the Event Core.
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Standard Darwin Core : Coeurs de standard et extensions
Orig
ines
de
donn
ées
et D
wC
Standard Darwin Core = Coeur de standard + éventuelles Extensions (schéma en étoile)
Différents coeurs de standard peuvent être utilisés en fonction de l’origine des données :- Coeur de standard Occurrence Core pour les collections d’Histoire Naturelle et les
observations simples de terrain- Coeur de standard Taxon pour les listes taxonomiques (référentiels, listes rouges,...)- Coeur de standard Événement (Event Core) pour les données d’échantillonnage
(relevés, transects, quadrats, pièges…)
Les Extensions sont utilisées afin de partager plus de détails sur les données :- Simple Multimedia Extension pour échanger des métadonnées sur les ressources
multimédia associées aux données, notamment des fichiers image, audio ou vidéos- Taxon Description pour échanger des descriptions de taxons sous forme de texte simple.- Measurement or Facts pour ajouter des informations sur des variables biotiques (taille,
couleur des fleurs…) ou abiotiques (pH, température de l’eau, hygrométrie…)- Description de traits d’histoire de vie- Material Sample pour décrire des échantillons (peau, os, ADN…)- Et plus encore !
NOTE: Certains coeurs de standard peuvent être utilisés comme des Extensions, comme le coeur de standard Occurrence qui peut être lié au coeur de standard Événement.
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Occurrence core
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Coeur de standard Occurrences
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Choose the Occurrence Core on the IPTO
ccur
renc
e C
ore
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Choisir le coeur de standard Occurrence sur l’IPTO
ccur
renc
e C
ore
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Mapping for Occurrence DataO
ccur
renc
e C
ore
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Mapping pour les données d’OccurrenceO
ccur
renc
e C
ore
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Taxon Core
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Coeur de standard Taxon
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Choose the Taxon Core on the IPTTa
xon
Cor
e
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Choisir le coeur de standard Taxon sur l’IPTTa
xon
Cor
e
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Mapping for Taxonomic DataTa
xon
Cor
e
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Mapping pour les données taxonomiquesTa
xon
Cor
e
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Event Core
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Coeur de standard Evénement d’échantillonnage
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Choose the Event Core on the IPTE
vent
Cor
e
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Choisir le coeur de standard Événement sur l’IPTE
vent
Cor
e
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Mapping for Event Core (Sampling Data)E
vent
Cor
e
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Mapping pour les données d’échantillonnageE
vent
Cor
e
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Darwin Core Extensions
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Extensions du Darwin Core
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Where to find the ExtensionsD
arw
in C
ore
Ext
ensi
ons
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Où trouver les ExtensionsE
xten
sion
s du
Dar
win
Cor
e
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A few examples of existing ExtensionsD
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in C
ore
Ext
ensi
ons
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Quelques exemples d’Extensions disponiblesE
xten
sion
s du
Dar
win
Cor
e
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23 August 2016THE BID PROGRAMME IS FUNDED BY THE EUROPEAN UNION
Origins of data: examples and illustrations Sophie Pamerlon
![Page 64: BID CE workshop 1 session 05 - Origins of Biodiversity Data](https://reader036.vdocuments.mx/reader036/viewer/2022062901/58f2acae1a28abea5b8b459d/html5/thumbnails/64.jpg)
23 AUGUST 2016THE BID PROGRAMME IS FUNDED BY THE EUROPEAN UNION
Origines des données : exemples et illustrationsSophie Pamerlon