apollo: developers call 2015-02-05
TRANSCRIPT
APOLLO: developers call
Nathan Dunn, Monica Munoz-Torres, Colin Diesh§, Deepak Unni§, Ian Holmes, Christine G. Elsik§, and Suzanna Lewis. Berkeley Bioinformatics Open-Source Projects (BBOP), Genomics Division, Lawrence Berkeley National Laboratory. § Divisions of Animal and Plant Sciences, University of MissouriApollo Developers Open Call – February 5th, 2015
OUTLINE
PROGRESS UPDATE • MILESTONE 2.0
• ARCHITECTURE simpler, extensible
• LAYOUT what’s new?
• MILESTONE 1.0.4
pending issues, Lmeline for tesLng and release
• FROM THE COMMUNITY
quesLons, comments, updates
Web Apollo CollaboraLve CuraLon and InteracLve Analysis of Genomes
2
APOLLO MILESTONE 2.0 3
MILESTONE 2.0
APOLLO ARCHITECTURE 4
ARCHITECTURE
APOLLO ARCHITECTURE 5
ARCHITECTURE(continued)
APOLLO LAYOUT 6
LAYOUT
APOLLO LAYOUT 7
Multiple Organisms
APOLLO LAYOUT 8
Reference Sequence Search & Selection
APOLLO LAYOUT 9
Track Details & Selection
APOLLO LAYOUT 10
Details per feature
APOLLO LAYOUT 11
Checks & Warnings
Details per exon
APOLLO MIL,ESTONE 1.0.4 12
MILESTONE 1.0.4
APOLLO WORDS FROM THE COMMUNITY 13
FROM THE COMMUNITY
ALL ARE WELCOMEcall or email to join the Apollo community
Open Call for Developers on the Second Thursday of each month at 9:00AM (Pacific Time).
Next call: March 12, 2015. Message @monimunozto for details.
BBOP Projects 14
Join the conversaLon by submi\ng your email at h]ps://lists.lbl.gov/sympa/subscribe/apollo
h]p://GenomeArchitect.org On GitHub at h]ps://github.com/GMOD/Apollo
• Web Apollo is supported by • NaLonal InsLtutes of Health (NIH) grants 5R01GM080203 from NIGMS, and 5R01HG004483 from NHGRI,
• Contract No. 60-‐8260-‐4-‐005 from the NaLonal Agricultural Library (NAL) at the United States Department of Agriculture (USDA), and by
• The Director, Office of Science, Office of Basic Energy Sciences, of the United States Department of Energy under Contract No. DE-‐AC02-‐05CH11231.
• Insect images used with permission: h]p://AlexanderWild.com
• For your a;en=on, thank you!
Thank you. 15
GenSAS
Stephen Ficklin
Gene Ontology
Chris Mungall
Seth Carbon
Heiko Dietze
Web Apollo: h]p://GenomeArchitect.org
i5K: h]p://arthropodgenomes.org/wiki/i5K
GO: h]p://GeneOntology.org
Thanks! NAL at USDA
Monica Poelchau
Christopher Childers
NAL team
HGSC at BCM
fringy Richards
Dan Hughes
Kim Worley
AraPort
Vivek Krishnakumar
Phytozome / JGI
Richard D. Hayes