tli 2012: data management for chickpea and groundnut research

Chickpea & Groundnut Research Data Management

in Tropical Legumes1Annual Meeting – Tropical Legumes 1

07 May - 11 May, 2012

P.V.N.S. Prasad

ICRISAT

Outline

• Introduction

• Present Status Trait Dictionaries Evaluation data Genotyping data Mapping data QTL data

• Next Steps

Introduction

• Crop Lead Center

• Trait Dictionaries and establish crop ontologies

• Catalogue of TLI Data sets

• Data for all TLI datasets

• Storing data into databases

Workshops and Training

• TL Data Managers training Workshop (9-19 August 2011) held at GCP Headquarters at CIMMYT in Mexico.

• Crop Ontology Community of Practice Workshop, 19-22 March 2012 held at Bioversity International, Maccarese, Italy

• Data Management Session at Integrated Breeding Platform Project Annual Meeting to be held on 4th to 9th June 2012 at Beijing, China.

Trait Dictionaries

• Trait Dictionaries for Fieldbook Development

• Ranking of traits

• Crop Ontologies established

Catalogue of TLI Data

• Catalogue of TL1 datasets - Compiled with the help of the reports submitted.

• Included Embargo, Responsible Person and Time Required

Accessibility

• Evaluation - ICIS Workbook, Retriever & Zeus

• Germplasm - ICIS Setgen, GMS search

• Mapping data - GDMS, CMap

• Genotyping data - GDMS, CMap

• QTL data - GDMS , CMap

• Marker data - GDMS

Next Steps • New Traits

• Data Curation

• IB Field book

• TLI Phase II

• Documentation http://wiki.cimmyt.org/confluence/display/MBP/Tropical Legume (Chickpeas)

http://wiki.cimmyt.org/confluence/display/MBP/Tropical Legume (Groundnuts)

Acknowledgements

• TL1 Chickpea and Groundnut Group

• Generation Challenge Program

• Integrated Breeding Platform

• Bioinformatics@ICRISAT

Thank you..