[ddbjing29]nig super computer の紹介と見学（第29回 ddbjing 講習会 in 三島）

1. 29 DDBJing in (2014.6.12)NIG SuperComputer NIG SuperComputer SE 29 DDBJing in (2014.6.12)NIG SuperComputer 2. 29 DDBJing in (2014.6.12)NIG SuperComputer 2012320143 http://sc.ddbj.nig.ac.jp 3. 29 DDBJing in (2014.6.12)NIG SuperComputer InniBand4xQDRInniBand4xFDR 2 [1.536TFLOPS] CPU:80/node :2TB/node PC(HPProliantDL980G7) Medium 1 [8.171TFLOPS] CPU:768 :10TB SMP(SGIAlQxUV1000) Fat 352 [117TFLOPS(CPU)] CPU:16/node :64GB/node PC(HPProliantSL230sGen8) Thin 2PB LustreFileSystem(DDNSFA10000) 3PB NFSFileSystem(NEXSANE60/E60X) 8 [6.144TFLOPS] CPU:80/node :2TB/node PC(HPProliantDL980G7) Medium 202 [90TFLOPS(CPU)] CPU:20/node :64GB/node PC(HPProliantSL230sGen8) Thin 5PB LustreFileSystem(DDNSFA12000) 3PB NFSFileSystem(HitachiHUS150) 20122014 ThinFatMed 554 9,672 1 768 10 800 7PB6PB 2014 Rank:170thinTop500(Nov,2011) (Rank:11thinJapan) 4. 29 DDBJing in (2014.6.12)NIG SuperComputer UnivaGridEngine(UGE) UGE denovo Mapping RNA-Seq ChIP-Seq tool other ALLPATHS-LG bwa cuinks MACS samtools pindel SOAPdenovo bowQe tophat BEDtools cutadapt Edenav3 bowQe2 picard Oases SOAP(v1) GATK Velvet SOAP3 Trinity SOAP3-dp URLhttp://sc.ddbj.nig.ac.jp/index.php/systemcong/ja-biotools 5. 29 DDBJing in (2014.6.12)NIG SuperComputer (gw.ddbj.nig.ac.jpgw2.ddbj.nig.ac.jp) qlogin qloginUGE UGE Lustre JobJobJob Resul t Resul t Resul t Resul tResult gateway () Lustre 6. 29 DDBJing in (2014.6.12)NIG SuperComputer URL http://sc.ddbj.nig.ac.jp/index.php/ja-nig-statistics 7. 29 DDBJing in (2014.6.12)NIG SuperComputer (http://sc.ddbj.nig.ac.jp) URL http://sc.ddbj.nig.ac.jp/index.php/ja-new-application 8. 29 DDBJing in (2014.6.12)NIG SuperComputer 20144 202 27 21 18 10 16 0 50 100 150 200 250 NGS NGS DB MD 69% 9%7%6% 3%6% 9. 29 DDBJing in (2014.6.12)NIG SuperComputer 20144 3 52 25 23 18 12 11 9 7 7 7 6 6 6 5 4 4 4 4 4 3 3 3 3 3 3 0 10 20 30 40 50 60 10. 29 DDBJing in (2014.6.12)NIG SuperComputer 4F 3F 2F 2F 2F 1F 1F 11. 29 DDBJing in (2014.6.12)NIG SuperComputer Fat InniBand thinmedium Phase1 Phase2 Fat Medium