c 3 - bioinformatics support for harvard researchers reddy gali

C3- Bioinformatics Support for Harvard Researchers

Reddy Gali

What kind of support

• Education

• Support / Consulting

• Outreach

• Informatics

• Collaboration

Education - Workshops• Introduction to Microarrays and affymetrix data

analysis• Metacore Pathway Analysis• Metadrug – Compound based pathway analysis• Transcription Factor Analysis using ExPlain,

TransFac and Transpro• Biobase- Biological Knowledge Library• Ingenuity Pathway Analysis• Sequence Alignment – BLAST & Clustal• Genome Browsing• Introduction to R/Bioconductor • ENSEMBL• Fundamentals in Matlab

Education –Workshops

• Illumina gene expression array analysis using Bioconductor/R

• Two Channel / cDNA gene expression analysis

• Integrative Genomics Viewer - Exploration of large integrated sequence and genomic datasets

• cDNA microarray analysis• Perl and BioPerl for Biologists• Biomedical Imaging Analysis• Expression analysis using GenePattern• MicroRNAs Analysis• Illumina Microarray data analysis

Education - Signup

Education - Signup

Education - Signup

Collaboration - Workshops

• Josiah Altschuler– DFCI• Deepti Anand – Joslin• Amir Karger – FAS -RC• Steven Finch – FAS-Statistics• Helga Thorvaldsdottir - MIT• Ravi Gutti – Children’s• Raymond Didanato - Biobase• Michael Reich – Broad MIT• Galina Gabriel– Children’s

Collaboration - Workshops

• Anosha Siripala - Genego• Nipun Patel – MGH• Aedin Culhane – DFCI• Reddy Gali – CBMI/Countway• David Osterbur – CBMI/Countway• Paul Bain – CBMI/Countway

• Lellean JeBailey – Genego

Collaboration - Projects

• Research Projects – Gene Expression– High fat diet in Pigs - BIDMC– Cord and Peripheral blood cells in Humans-

Children’s– mRNA house keeping genes– Children’s

Support / Consulting

•HMS •HSDM•BWH •BIDMC•CH•Joslin •FAS •MGH •CBMI •HSPH

Outreach

Harvard Catalyst Site

Harvard Catalyst e-mail

Word of Mouth / Flyers

ABCD e-mail lists

November 2009 – June 2010

55 bioinformatics workshops ~ 1000 attendees

110 consulting sessions – 50 distinct users

99 RT tickets since February

C3 Bioinformatics Flyer

Thank you