1 needleman wunsch (1970) the next slide is just a reminder… slides 3 and on show the exact...
Post on 19-Dec-2015
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1
Needleman Wunsch (1970)Needleman Wunsch (1970)
• The next slide is just a reminder…
• Slides 3 and on show the exact example shown in class.
Enjoy
2
Needleman Wunsch (1970)Needleman Wunsch (1970)
Gap penaltyjiF
Gap penaltyjiF
yxsjiF
jiFji
)1,(
),1(
),,()1,1(
max),(
0iF ),( i ×Gap penalty 0, jF )( j ×Gap penalty
• Base Case:
• Recursion rule
Finds the best alignment for the first Finds the best alignment for the first ii characters of sequence characters of sequence xx with the first with the first jj of of sequence sequence yy..
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