Ген - ориентированные базы данных и геномные браузеры
Post on 21-Mar-2016
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- - ? - Human Genome Browser
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- ? ( ) , ,
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Gene Entrez ( LocusLink) NCBI , /
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DUT
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:BibliographyRelated Articles in PubMedGeneRIFs: Gene References Into FunctionInteractionsGeneral gene informationMarkersGenotypesPathwaysHomologyGeneOntologyGeneral protein information (Names, ECs, ACs)NCBI Reference Sequences (RefSeq) mRNAs and proteinsReference assembly + Alternate assembly: GenomicRelated Sequences (links between ACs of different types)Additional Links (OMIM, PharmGKB, HRDP, UniGene)
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MapViewer
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(comparative genomics) ,
NCBI -> Genomic Biology (http://www.ncbi.nlm.nih.gov/Genomes/)
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http://www.ncbi.nlm.nih.gov/genomes/VIRUSES/viruses.html ( )
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HIV2
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Sequence Viewer
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Protein coding genes link
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gMap (comparative genomics)Zoom in, zoom-out (!) !
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NCBITools legend:T - TaxMap;P - ProtTable;C - COG Table;D - 3-D neighbors;L - BLAST;S - CDD search;G - GenePlot;X - TaxPlot;M - gMap;F - FTP;R - Publications
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COG Table
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COG Table (Overview)
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TaxMap , BLAST- Click
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Genomes in progress
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TIGR Comprehensive Microbial Resources , http://cmr.tigr.org/tigr-scripts/CMR/CmrHomePage.cgi
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TIGR
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NCBI Map Viewer, FTP , , MapViewer LocusLink
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Human :Ensembl (http://www.ensembl.org) EBI & Sanger Institute, IDs, 35 Human Genome Browser (http://genome.ucsc.edu/) UCSC, USA GenBank IDs, 41
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EnsemblEnsembl Tutorials and Worked Examples: http://www.ensembl.org/info/helpdesk/tutorials/index.html
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Human Genome BrowserRefSeq IDChr BandGene nameCoords
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DUT gene (dUTPAse)
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RefSeq
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Provided tracks (types)
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Custom Track : - Upload BED, GFF, GTF, WIG PSL :.,chr11500319498name11+chr15895459871name21+chr1321669332669name31-
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?
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BLATBLAT = BLAST , -
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Table Browser
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