a sensor histidine kinase coordinates cell wall architecture with cell division in bacillus subtilis...

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A sensor histidine kinase coordinates cell wall architecture with cell division in Bacillus subtilis Component annotation PMID:18573169 http://www.ncbi.nlm.nih.gov/pmc/ articles/PMC2574549/

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Page 1: A sensor histidine kinase coordinates cell wall architecture with cell division in Bacillus subtilis Component annotation PMID:18573169

A sensor histidine kinase coordinates cell wall architecture

with cell division in Bacillus subtilis

Component annotationPMID:18573169

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2574549/

Page 2: A sensor histidine kinase coordinates cell wall architecture with cell division in Bacillus subtilis Component annotation PMID:18573169

Simple component annotation

• Figure 1 localizes 2 proteins to the septum of B. subtilis

Page 3: A sensor histidine kinase coordinates cell wall architecture with cell division in Bacillus subtilis Component annotation PMID:18573169

What proteins?

Page 4: A sensor histidine kinase coordinates cell wall architecture with cell division in Bacillus subtilis Component annotation PMID:18573169

What GO term?

• “YycG and FtsZ co-localize to the septum”

• Septum can be at the cellular level or at the level of a tissue

• Qualifier: colocalizes_with

Page 5: A sensor histidine kinase coordinates cell wall architecture with cell division in Bacillus subtilis Component annotation PMID:18573169

Evidence

• Experimental - Yes– Mutant – No– Based on direct

physical interaction – No

– Direct assay – Yes• IDA

Page 6: A sensor histidine kinase coordinates cell wall architecture with cell division in Bacillus subtilis Component annotation PMID:18573169

Additional annotations

• Figures 2-4 include evidence for annotations that are not allowed in CACAO (protein binding)

• Figure 5 supports annotation of another protein, YycF to GO:0009295 ! Nucleoid via similar localization experiments

• Figure 6 supports other annotations