©2015 waters corporation 1 identify chemical and herbal components of natural products using lc/ms...

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©2015 Waters Corporation Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk, PhD Natural Products Research Waters Corporation

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Page 2: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 2

Background

The usage and discovery of natural products for herbal remedies, or phytopharmaceuticals are expanding every year worldwide– Global Dietary/Herbal Supplement Market 2014: $61.84 Billion

USD

Herb and plant-based remedies

Traditional Medicines

Personal-care products

Herbal supplements

Page 3: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 3

Natural Products = multiple-component mixture!

AlkaloidsTerpenesPhenylpropanoids

Terpenoids

Phenolics

Glucosinolates

Polyketides Can contain >1000s of unique

compounds!

http://www.puremedic.com/images/img-products.jpg?bc_t=7tA9BUifDDKKc3X5mMNtWw

Page 4: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 4

Concerns in Natural Products

• NATURAL ≠ SAFE!

• Adulteration is a major concern with natural

products in the market

• Deliberately substituted (financial incentive)

• Increase efficacy

~903 adulterated natural health products that have been detected in the industry! (US FDA)

Page 5: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 5

Liquid chromatography coupled with high resolution mass spectrometry

LC-MS screening gained popularity with advent of electrospray ionization

High sensitivity to detect low abundance compounds in extracts (nM sensitivity)

Ability to detect multiple compounds without isolation

Accurate mass screening

Provides information on isotope ratios which can ensure the correct assignment of elemental composition

Enables rapid determination of molecular formula for peak of interest

What is Accurate Mass?

Nominal Mass:

Accurate mass:

CO = 28N2 = 28C2H4 = 28

CO= 27.9949N2= 28.0061C2H4= 28.0313

ID of compounds

Page 6: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 6

Obtain elemental composition from

exact mass

Obtain possible structures from various different online databases

Fragment ion confirmation by

checking literature

LC chromatograms and MS spectraManually select each component by extracted ion chromatogram

Structure elucidation procedure for each component chosen

Confirm compound identity and structure

Data Acquisition

Accurate mass screening: Challenges Traditional work flow

C2H4= 28.0313

Page 7: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 7

• Fast, robust and reproducible for all of your assays

• Interactive workflow-driven data platform

• Ultra sensitive exact mass MSE

• Optimized for Natural Product LC/MS experiments

Waters Natural ProductsApplication Solution with UNIFI ®

Waters ASR Green Tea Extract

& Catechin in Standard Mix

ACQUITY UPLC® I-Class,ACQUITY UPLC HSS T3 Column

Xevo® G2-XS QTof MS

UNIFI Natural Product Application solution

Ingredient Profiling Application

Synthetic Adulterant Application

• Traditional Medicine Library

• Workflow Template

• Processing/ Acquisition methods

• Reports

• Synthetic Adulterant Library

• Workflow Template

• Processing/ Acquisition methods

• Reports

Page 8: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 8

Key Features for Natural Product Screening

Fragment Ion Analysis - MSE 3D Peak Detection and Componentisation

“Snapshot in time”: gather all data possible in one run

Identification tools

• Traditional Medicine Library

• Synthetic Adulterant Library

• MassFragment

1 2

3 4Workflow and Reporting

Page 9: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 9

Available Item Tags:– Chinese Name (in Mandarin)

– Classification based on chemical class

– Plant of origin

– Latin Name:o Latin name for the exact

use of the herbo In NP research, Latin Name

is the standard search format for plant of origin

Contains about 600 herbs– All herbs listed in 2010

Chinese PharmacopoeiaClick the plants of interest for

import

Natural Product Application Solution Waters Traditional Medicine Library

Page 11: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 11

Other names of compound

Item tags (Pharmacological action)

Compound properties Compound structure

Compound identifiers (CAS number, Chemspider ID and PubChem ID )

Synthetic Adulterant Library

Page 12: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 12

Diagnostic experimental fragment ions

Synthetic Adulterant Library

Page 13: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 13

Custom Natural Product Library

Researchers can import or create their own custom natural products library for component screening

– Easy import format such as excel documents

– A specific library for the researcher’s unique natural product sampleso Saves publications and other detection data

– Simple to curate using online sources such as chemspider

Example: Hoodia standard library (Collaboration project with University of Mississippi, Dr. Bharathi Avula/Dr Yan-Hong Wang)

Page 14: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 14

Ginsenoside Rb1

Structure confirmation using MassFragment• MassFragment is an in-

silico fragmentation tool which uses systematic bond disconnection approach to identify possible structures from the parent structure

• Allows higher confidence to identify complex chemical components

• Removes possible false positives in the analysis

12 components for confirmation!

Page 15: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 15

Natural Products Workflow (Data to Result)

Ensures data quality

Component identification

Comparison of two samples

Workflow templates What is it?

– Unique data processing and review workflow

– Uses data filters to automatically screen componentised data

– Filters can be saved as a routine workflow.

Page 16: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 16

Natural Products Screening workflowCamellia sinensis (Green tea)

Component list

Low CE

High CE

Chromatograph for each component

Workflow templates

Detected fragments

Page 17: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 17

Natural Products Screening workflowCamellia sinensis (Green tea)–Binary Compare

Component comparison

Workflow templates Compound

differences

Page 18: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 18

Natural Products (NP) Screening study

Ganoderma lucidum

Strychnos nuxvomica(poison nut)

Commiphora mukul(guggul)

Panax Ginseng

Fructus Mume

Euryale Ferox Poria Cocos

Cassia tora L.

Semen Pruni

Dioscoreaopposita

1) Oprah (Weight loss)

2) DaiDaiHua (Weight loss)

3) D.N. Capsule (Pain Relief)

Aurantii fructus immaturus

Picrorhiza kurroa(Kutki)

Place of Origin Ingredients on LabelSample

Page 19: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 19

LC conditions

– LC System: Waters® ACQUITY UPLC I-Class

– Column: HSS T3 C18 2.1x100mm, 1.8µm

– Column temp: 40 ºC

– Flow rate: 600 µL/min

– Injection volume: 1 µL

– Mobile phase A: H2O in 0.1% formic acid

– Mobile phase B: ACN

– Gradient: 2-100% B in 14.5 min and 2.5 min 98% A equilibration

MSE conditions

– MS System: Waters Xevo G2-XS QTof

– Ionization: ESI positive and negative

– Capillary voltage: 1.5 kV(+Ve) & 1.5 kV(-Ve)

– Trap CE Ramp 10-40 eV

– Acquisition range: 50-1500 m/z

NP Screening StudyLC/MS method

ACQUITY UPLC I-Class G2-XS QTof MS

Page 20: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 20

NP Screening Study Oprah -Screening

Chromatograph for each component

Low CE

Workflow templates

High CE

Components list Item tags

Three fragments identified A comprehensive view using

workflows to identify compounds

Page 21: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 21

NP Screening StudyOprah - Results

Ganoderma lucidum Panax Ginseng

Euryale Ferox Poria Cocos

Semen Pruni

Dioscoreaopposita

Overview plot of components

Fructus Mume Cassia  tora L.

Ingredients Present Ingredients Absent

Five major compounds were detected from Fructus mume and cassiae tora

• Verified through fragment ions, error limits and isotopic match intensity

Page 22: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 22

NP Screening StudyDaidaihua - Results

Chromatograph for each component

Low CE

Workflow templates

High CE

Components listItem tags

One fragments identified

Page 23: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 23

NP Screening StudyDaidaihua - ResultsOverview plot of components

Ingredients Present

New Ingredients Present

Adulterants Present

Three adulterants were detected with the highest response. Nine major compounds were detected from Aurantii fructus immaturus and Nelumbinis folium

• Verified through fragment ions, error limits and isotopic match intensity

Aurantii fructus immaturus Nelumbinis folium

Sibutramine Nor-acetildenafil

Cyproterone acetate

Page 24: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 24

Low CE

Workflow Templates

Components list

High CE

Four Diagnostic Fragments Matched!

Chromatograph of each

component

Item tags

• Phenylbutazone – Anti-inflammatory drug detected• Strychnine from Strychni Semen was detected

NP Screening StudyD.N Capsule – Screening

Page 25: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 25

Chromatograph of Unknown peak

Low CE

No Match high intensity workflow

High intensity peak (not ID)

High CE

One high response unknown peak was found using the “No Match high intensity filter”– “Elucidate” function was used to deduce possible compound

Components list

NP Screening StudyD.N Capsule – Screening

Page 26: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 26

Discovery Tools

• Elemental Composition

• Library Search

• Fragment Match

Search hits

Compound information

MS spectrum

Citations

Fragment matches

Two fragments identified

Oxyphenbutazone is an anti-inflammatory drug

NP Screening StudyD.N Capsule – Elucidation

Page 27: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 27

Overview plot of components

Ingredients Present

Ingredients Absent

Strychnos nuxvomica

Commiphora mukulPicrorhiza kurroa

Adulterants Present

Phenylbutazone

Oxyphenbutazone

Two adulterants were detected with the highest response. Two major compounds were detected from Strychnos nuxvomica

• Verified through precursor exact mass, fragment ions and isotopic match intensity

Strychnine

NP Screening StudyD.N Capsule – Summary

Page 28: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 28

o Factors such as species, geographical location, growth time, etc.

• Any potential markers or patterns that are seen?o Multivariate analysis (MVA) can be used!

Multivariate Analysis – Statistical Modelling

Chemical profiling with UNIFI

Botanical Extract

Botanical chemical fingerprint

Questions:•Is the chemical fingerprint

similar or different?•If different, what changed or

is new?

What about comparison with a group of samples?

Generate Marker matrix using 3D peak signature

LC/MS spectrum

Page 29: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 29

Chemical Profiling study:Ginseng comparison study

Ingredients:Panax quinquefoliusRootForm:Capsules

Ingredients:Red Panax ginseng root extract Other: honey, alcohol

Form:Oral Drink

Panaxquinquefolius

Panax notoginseng

Panax ginseng

Reference ginseng products

Commercial ginseng products

Red Panax Ginseng

Wild Harvest: American Ginseng

Prince of Peace: Red Panax Ginseng Extractum

Page 30: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 30

LC conditions

– LC System: Waters® ACQUITY UPLC I-Class

– Column: HSS T3 2.1x100mm, 1.8µm

– Column temp: 45 ºC

– Flow rate: 600 µL/min

– Injection volume: 1 µL

– Mobile phase A: H2O in 0.1% formic acid

– Mobile phase B: ACN in 0.1% formic acid

– Gradient: 2-90% B in 18.0 min and 2 min 90% A equilibration

MSE conditions

– MS System: Waters Xevo G2-XS QTof

– Ionization: ESI positive and negative

– Capillary voltage: 6.0 kV(+Ve) & 6.0 kV(-Ve)

– Trap CE Ramp 25-55 eV

– Acquisition range: 100-1500 m/z

Application Example:Ginseng comparison study

Page 31: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 31

-2500

-2000

-1500

-1000

-500

0

500

1000

1500

2000

2500

-3000 -2500 -2000 -1500 -1000 -500 0 500 1000 1500 2000 2500 3000

PC

2 (

32.1

% V

aria

nce

)

PC 1 (39.5% Variance)

Authentic vs Commerical Ginseng Products

American GinsengPGPG redPPPQPrince RedPG red

American Ginseng

PG redPGPrince Red

PG

PP

Prince Red

PPPP

PQ

Prince Red

PQ

PG red

American GinsengAmerican Ginseng

PG

PQ

UNIFI 3.0.3 - Ginseng_XevoG2SQTof_POS 2AP2015.usp (M12: PCA-X) - 2015-09-15 15:44:47 (UTC-5)

Panax ginseng

Panax quinquefolius

Panax notoginseng

Red Panax Ginseng

Application Example:Ginseng comparison study – Results

Principal component analysis (PCA) Scores Plot

PCA scores plot displays how different each species of ginseng is but classified the commercial products correctly with the authentic ginseng samples

Prince of Peace

Wild harvest

Page 32: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 32

-0.15

-0.10

-0.05

-0.00

0.05

0.10

0.15

0.20

0.25

-0.08 -0.06 -0.04 -0.02 0.00 0.02 0.04 0.06 0.08 0.10 0.12 0.14 0.16 0.18 0.20 0.22 0.24 0.26 0.28 0.30 0.32 0.34

PC

2 L

oad

ing

s

PC1 Loadings

Authentic vs Commerical Ginseng Products

141.95874470.10730

172.97701182.98511

468.17599329.08394473.12574

137.98770392.15445438.19623456.20712 254.16113

361.10971290.11346349.16150276.14393294.15446253.07068271.08116282.11927283.13963342.13910347.09444

158.96135

490.19117384.11448472.18055311.07349646.31668310.12805328.13861484.26463166.08635120.08101342.00315322.21209100.07597

590.24350

428.19130

410.18022127.03926529.20216109.02870225.95589266.98246182.98513284.14932266.13874

281.11269100.07596

306.13304367.14929

363.17712

386.18058370.18539

205.09712188.07075

428.19129

356.17022290.13849338.15946305.98176127.03923315.06428355.10206

410.18023489.19535364.16109888.41408637.42950

655.44020857.48448

439.35579457.36679355.16469332.19648

339.10689147.04409

801.49738200.10718

513.19369522.21702

417.18717

177.05463369.11730

412.22243751.46021

637.42982870.40311839.47414

855.44739

619.41936

381.18731

421.34581765.47667439.35644

374.15911639.44548

382.21192

365.19271619.41907

330.21321564.35822498.25879

621.39905608.38403

839.47368817.49184963.54928985.53130

1016.45983457.36652655.43979439.35607

801.49719

819.50765

386.17031652.41022412.05735208.00540317.05420

319.05008253.00314390.07557573.04959278.02346249.03208419.202751016.46086603.42394

476.21166

985.53167

1131.58880696.43643

1162.51710439.35632405.35078

423.36129441.37169

243.14876476.21161603.424451016.46120765.47631985.53151421.34544339.26778639.44515

955.52137

801.49744

441.37219

423.36176

405.35118

621.43490

226.14621227.15407184.09949823.479391033.46452

459.38273567.40302

573.41420603.42462

585.41393555.40344349.28847952.51394

735.46680

217.19500203.17961854.40835977.57693367.29909775.45865

753.47698978.59128971.49440

692.35696717.45579486.24756866.40910986.45121

1017.49135439.35608785.50267 637.42933421.34558403.33496745.45095583.39838763.46177765.47610619.41920

708.36962

137.98768639.44568801.49738

784.49229

786.52599993.613151440.30302

876.49746776.00577

992.60958

1350.27107493.25518991.59218

985.51061966.52886

969.53728

1079.45197778.483021059.60583

1031.50637

1000.46632

715.47391877.521681005.60693

913.54928895.53864

515.38711820.40349

930.569001075.60133

587.42976

569.41931551.40870

784.51812

533.39790

749.48217

713.46029

731.47103

1260.23990

767.49249

935.53064789.47385

309.117751267.72479805.44778880.42439

1439.802161047.47768929.54435851.44342911.533401225.865421207.854661440.81701661.42713

783.48730

459.38252

1387.91896385.30947482.39824341.28329893.49938

441.37251

367.29913549.39268323.27253692.35650

567.40351464.38774337.28816349.28854

423.36215

405.35137

299.23658281.22608295.24169321.25733313.25232243.21050531.38167585.41407423.42028

335.27288203.17942283.24157297.25715187.14814674.34624365.31946217.19509269.22616189.16363765.47651351.30303423.68832

881.73616

363.30353

603.42534

899.74744

621.43567

381.31452446.37710423.73228

327.26799215.17946423.53358

1061.79895

241.19484271.24171301.25211267.21056161.13256309.25731311.27308273.22108207.17422353.28333255.21061285.22111201.16370383.32993734.36743

1079.80936

441.431551223.85188

644.45044405.40832

259.20562863.72539800.513751492.84440147.11712603.81490747.46591603.49509901.42169

547.362491259.87379621.50538

1241.86236

1456.826781439.93527

805.469581043.78809643.41704

1421.92494

836.398361277.882791205.84293

846.55204854.40920

721.358791034.47233

839.45361

1025.77672

1294.77286

662.46101

823.47998

832.54026

1474.836331220.71659

933.39462895.43521845.53532859.55048820.47159

705.387241229.70370

914.43151440.73950852.41331885.44952100.07596158.96134829.45648

466.26377471.21922708.36978405.35081423.36138909.47981689.42459707.43500

801.49700336.12252302.13799381.21657

765.476181147.58302603.42415

439.35648

421.34569

801.49762

823.47927457.36701783.48665405.35063

708.36899

655.43999684.33741745.44993

403.33484763.46027601.40871793.46865573.41376591.42406308.22165783.48618477.39262423.36127431.31432

441.37174

603.42398

629.43337

315.22046793.46810621.43479655.43987405.35076

865.48967896.41899663.44529645.43476801.49700

603.42449765.47675785.38485291.12249

990.58645

579.14820543.12778561.13848783.48696383.23240619.41900

439.35615423.36128

817.49229

457.36659

643.44908322.22817785.50148277.12762203.09106575.22976

299.11004322.18530444.24994

1136.58163439.356371390.71831407.36595457.36680

938.58135

633.39872651.40908673.39087

639.44519100.07591444.25026

936.56407

384.21636603.42445783.48688805.46818839.45260836.39833621.43485

405.35099367.29865459.38271903.42210

423.36163823.47948441.37196765.47666854.40917867.43795885.44914688.35193275.20021

425.37672443.38669

407.36630891.50452767.49232497.146941241.64788

1263.63139

1223.63896587.42956820.403081279.60435749.481111258.67531

1294.55992605.43965

528.07680640.30267

809.46359

787.48190

769.47114886.39838219.17429264.23198291.12220

920.58105

439.35662457.36709

421.34591655.44036

859.55022801.57535427.70832585.41357

475.37770

839.45247765.47652

783.48709

403.33474

801.49815

947.55507810.01142827.95406493.38798

905.42002637.42966812.48915845.53470

900.41443

885.44935

823.47963

619.41906854.40911603.42447

799.48092441.37161423.36157

1032.63267463.21198

1142.59864

870.40431459.38255824.39980

793.46892753.47653

735.46636

637.42931677.42196439.35576655.44041

457.36666421.34554

425.37568443.38539749.48202754.35670921.51618881.52389605.43940587.42960

1263.63195

899.53373407.36583

1012.46614767.49237929.54427365.10496

1294.56178640.30240

396.03453

423.36163

925.51107

441.37202

389.26791

405.35099

621.43496603.42459356.22166

1046.64851

1146.522891115.59308409.381681110.63852

786.53378747.465141129.572561160.50296

887.49732808.51721

839.40617420.20749

383.16913303.12250400.19566405.15113587.42920605.43964407.36612425.37673443.386821233.621051264.55085498.06617625.29625462.18068460.21220

621.43453327.21361

767.49160

789.47339367.29862569.41847217.19491

807.48412794.01587

796.49294838.41353459.38213823.45945

423.36148

603.42402

405.35082

884.41921

441.37178

820.40297793.46913 869.45377475.37709353.22920

1241.648921223.63858497.14682492.191381294.56100

528.07632

1263.63172

640.30267

749.482051141.069311155.666141151.23602603.781281128.643781322.295941350.75610

1165.52777713.46075583.268051167.66000365.10501

574.28195969.53646

1341.26710533.39799731.471361154.66048396.034491112.61668

738.149881191.86091

789.47414325.11270

1497.45469

551.40876820.40351

285.25738

1133.59560

1120.59480

425.37749

965.00637957.523171415.70289

569.41936649.217761113.57888

407.36695

1131.67864

1147.56245

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767.492641091.59716

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676.36179 1000.466431031.50661

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411.09291417.23878337.27274

UNIFI 3.0.3 - Ginseng_XevoG2SQTof_POS 2AP2015.usp (M12: PCA-X) - 2015-09-15 15:53:52 (UTC-5)

Panax ginseng

Panax quinquefolius

Panax notoginseng

PCA Loadings Plot

Application Example:Ginseng comparison study – Results

PCA loadings plot displays all the contributing variables (m/z) that explain how different each of the ginseng species are.

Export important markers into structure elucidation tools for identification

Page 33: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 33

Discovery Tool

• Elemental Composition

• Library Search

• Fragment Match

Marker List

Search hits

Compound information

MS spectrum

Marker Summary

Fragments identified

Fragment matches

Application Example:Ginseng comparison study – Results

Bring all markers from the PCA loadings and search using the TM library/Chemspider to identify compounds of interest

Page 34: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 34

Application Example:Ginseng comparison study – Results

Panax ginseng

Notoginsenoside Fc

Ginsenoside Rf

Ginsenoside Rb2

Panax quinquefolius

Gypenoside X VII

Ginsenoside Rd

Ginsenoside Re

Pseudoginsenoside F11

Panax notoginseng

Notoginsenoside R4

Notoginsenoside R1

Notoginsenoside R2

Notoginsenoside Fa

PCA Loadings Plot UNIFI library searching

Identified Ginseng Markers

Page 35: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 35

Summary of UNIFI NP workflowApplication workflows

Sample Prep

UPLC/QTof MSE Data Acquisition

UNIFI Data Processing and Component ID

Identified Components

MS/MS Fragments Verification using MassFragmentTM

Import Components from Waters TM and/or Adulterant Library

Unidentified Components

Structure Elucidation Tool +

Search Internet Libraries

Confirm Component

Identity

Search against Waters TM Library

Structure elucidation and online database

search

Single software (UNIFI) to execute

all the identification steps

MVA of chemical profile

Marker identification +Search Internal/ Internet

Libraries

MVA analysis of chemical profiles of

samples

Page 36: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 36

In Summary

There are an increasing number of NPs every year throughout the world – Concerns are increasing due to the

cases of adulteration in NHPs

Natural Products are complex mixtures and require comprehensive analytical technologies identify and confirm chemical components

Natural Products solution with UNIFI is a powerful approach in screening for:– Ingredients in natural health products

– Illegal synthetic adulterants

Page 37: ©2015 Waters Corporation 1 Identify Chemical and Herbal Components of Natural Products Using LC/MS Coupled with a Novel Informatics Platform Jimmy Yuk,

©2015 Waters Corporation 37

Acknowledgements

Dr. Bharthi AvulaDr. Yan-Hong Wang

Waters Natural Products teamDr. Dhaval Patel Waters SingaporeDr. Lirui (Kevin) Qiao Waters, China

Dr. Giorgis Isaac Waters CorporationDr. Kate Yu Waters Corporation Dr. Kerri Smith Waters CorporationMr. James Traub Waters Corporation

University of Mississippi National Center for Natural Product Research