生物信息学 相关数据库资源介绍 刘 吉 平 reference :
TRANSCRIPT
生物信息学相关数据库资源介绍
刘 吉 平Reference : www.biosino.org
生物信息学相关数据库资源 核酸及其相关数据库(序列数据库、基因组相关数
据库、核酸三维结构数据库、其他) 蛋白质相关数据库(序列数据库、蛋白质三维结构
数据库、蛋白质组数据库(二维凝胶电泳数据库)、信号传导及蛋白质-蛋白质相互作用相关数据库、DNA和蛋白质相互作用数据库)
基因或蛋白质一些特定数据库 糖类及其相关数据库 蛋白质翻译后修饰相关数据库 基因表达数据库 人类基因突变及疾病相关数据库 进化相关数据库及资源专利数据库 资源目录服务器或网页
核酸及其相关数据库 核酸序列数据库 BIOSINO 我国的核酸序列公共数据库 EMBL - EMBL Nucleotide sequence database (EBI)
* GenBank - GenBank Nucleotide Sequence databas
e (NCBI) * DDBJ - DNA Data Bank of Japan * dbEST - Database of Expressed Sequence Tags
(NCBI) dbSTS - Database of Sequence Tagged Sites (NCB
I)
2. 基因组及相关数据库 Genomic Databases
GenomeWeb(HGMP) - A catalogue of useful Web sites for Genomics with a set of collections of genome databases
GSDB - Genome Sequence database (NCGR)
GOLD - Genomes On-line db 一些数据库的直接链接
3. 核酸三维结构数据库
NDB - Nucleic Acid Databank (3D structures)
BNASDB - Nucleic acid structure db from University of Pune
4. 其他 AsDb - Aberrant Splicing db ACUTS - Ancient conserved untranslated DNA seque
nces db Codon Usage Db - The frequency of codon use in eac
h organism is made searchable through this World Wide Web site.
EPD - Eukaryotic Promoter db HOVERGEN - Homologous Vertebrate Genes db IMGT - ImMunoGeneTics db [Mirror at EBI] ISIS - Intron Sequence and Information System RDP - Ribosomal db Project gRNAs db - Guide RNA db PLACE - Plant cis-acting regulatory DNA elements db
其它 PlantCARE - Plant cis-acting regulatory DNA elem
ents db sRNA db - Small RNA db ssu rRNA - Small ribosomal subunit db lsu rRNA - Large ribosomal subunit db 5S rRNA - 5S ribosomal RNA db tmRNA Website tmRDB - tmRNA dB tRNA - tRNA compilation from the University of B
ayreuth uRNADB - uRNA db
其他 RNA editing - RNA editing site RNAmod db - RNA modification db TelDB - Multimedia Telomere Resourc
e TRADAT - TRAnscription Databases a
nd Analysis Tools Subviral RNA db - Small circular RNAs
db (viroid and viroid-like)
Transgenics
Cre Transgenic Database - Cre transgenic mouse lines
Transgenic/Targeted Mutation Database - Information on transgenic animals and targeted mutations
1. 蛋白质序列和相关数据库 SWISS-PROT - SWISS-PROT annotat
ed protein sequence db PIR-international -The Protein Informat
ion Resource (protein sequence) MIPS - Martinsried institute for protein
sequence and homology data and yeast genome information
蛋白质及其相关数据库 PROSITE - PROSITE dictionary of protein sites and patterns InterPro - Integrated Resources of Proteins Domains and Funct
ional Sites BLOCKS - BLOCKS db DOMO - Protein domain db (Automatically generated) Pfam - Protein families db (HMM derived) [Mirror at Sanger] PRINTS - Protein Motif fingerprint db ProDom - Protein domain db (Automatically generated) PROTOMAP - An automatic hierarchical classification of SWIS
S-PROT proteins SBASE - SBASE domain db (Protein domain sequence library) SMART - Protein signalling and extracellular domain patterns
(Simple Modular Architecture Research Tool) ProClass - Protein sequence alignments and curation of protei
n families
. 蛋白质三维结构和相关数据库
PDB - Protein Data Bank [Mirrors in EBI] BioMagResBank - Repository for data on proteins, peptides,
and nucleic acids from NMR spectroscopy SWISS-MODEL Repository - Automatically generated protein
models db ModBase - Db of comparative protein structure models CATH - UCL BSM structural classification of proteins SCOP - Structural classification of proteins [Mirror at USA |
Israel | Singapore | Australia] Mol_R_Us - Molecules R Us, browser for PDB BMM Domain Server - Biomolecular Modelling Laboratory (I
CRF) protein domain server PRESAGE - Collaborative resource for structural genomics
蛋白质三维结构和相关数据库 SBASE - SBASE domain db (Protein domain seq
uence library) SMART - Protein signalling and extracellular do
main patterns (Simple Modular Architecture Research Tool)
ProClass - Protein sequence alignments and curation of protein families
Kabat - Kabat db of protein of immunological interest
PMD - Protein Mutant db
蛋白质二维凝胶电泳数据库
WORLD-2DPAGE - A complete index of 2D-PAGE db and servers
Phoretix links - Phoretix page of links to 2D gel db
信号传导及蛋白质 - 蛋白质相互作用相关数据库
DIP - Db of Interacting Proteins INTERACT - Protein-Protein interaction db ProNet - Protein-Protein interaction db CANSITE - Signal Transduction's Web SPAD - Signaling pathway db CSNDB - Cell Signaling Networks db
特定基因或蛋白质的数据库 AAA - AAA family of ATPases server
Acetylcholinesterases ALDH - Aldehyde dehydrogenase gene sup
erfamily db Aminoacyl-tRNA synthetases
in SWISS-PROT - List of aminoacyl-tRNA synthetases in SWISS-PROT
AARSDB - Aminoacyl-tRNA synthetases db Allergens in SWISS-PROT - Nomenclature
and index of allergens in SWISS-PROT
特定基因或蛋白质的数据库 AMSDb - Antimicrobial sequences db Antibody resource page - Links to antibody r
elated Web resources Australian venom and toxin db Bacillus thuringiensis toxin specificity db TFII - Basal transcription factors Blood group antigens in SWISS-PROT BCGD - Breast cancer genes db from MBCR BRENDA - Db of enzyme functional data
特定基因或蛋白质的数据库 EF-hand CaBP - EF-hand calcium-binding p
roteins db CAZy - Carbohydrate-Active enZYmes Web
site CBS domain - Cystathionine Beta Synthase
domain WWW page CD antigens in SWISS-PROT - Nomenclatur
e for surface proteins of human leucocytes (CD)
特定基因或蛋白质的数据库 CD antigens in PROW - Database on i
nformation about CD antigens Chaperonin - Information on GroEL an
d GroES chaperonins Conotoxins - Information on conotoxin
s from a Web site on cone shells 。。 etc 。。
糖类相关数据库 CarbBank - Complex Carbohydrate Structur
e Database GlycoSuiteDB - Db of glycan structures
TGN - The Glycoscience Network FCCA - Forum Carbohydrates Coming of Ag
e CARBHYD - Carbohydrate information WW
W sites Monosacharide browser - Space filling Fisch
er projection for monosaccharides
蛋白质翻译后修饰相关数据库 O-GlycBase - O-glycosylated proteins
db PhosphoBase - Phosphorylation sites
db RESID - Db of Amino Acid Modificatio
ns
基因表达数据库 ASDB - Protein products and expression patterns of
alternatively-spliced genes Axeldb - Gene expression in Xenopus BodyMap - Human and mouse gene expression dat
a EpoDB - Genes expressed in vertebrate RBC FlyView - Drosophila development and genetics Gene Expression Database (GXD) - Mouse gene e
xpression and genomics Kidney Development Database - Kidney developme
nt and gene expression
基因表达数据库 MAGEST - Ascidian (Halocynthia roretzi) gene
expression patterns Mouse Atlas and Gene Expression Database -
Spatially-mapped gene expression data PEDB - Normal and aberrant prostate gene exp
ression Tooth Development Database - Gene expressi
on in dental tissue TRIPLES - TRansposon-Insertion Phenotypes,
Localization and Expression in Saccharomyces
人类基因突变及疾病相关数据库 HMGD - Human Gene Mutation db SVD - Se
quence variation db HGBASE - Human Genic Bi-Allelic Sequence
s db The SNP consortium dbSNP - Human single nucleotide polymorphi
sm (SNP) db List of mutation databases from OMIM
List of mutation databases from IMT (Finland)
人类基因突变及疾病相关数据库
ADB - Albinism db (Mutations in human genes causing albinism) Alpha-glucosidase - Information about human acid alpha-glucosidase (GSD-II)
AR mutations - Human androgen receptor mutation db
Antithrombin mutation db Asthma and Allergy gene db BIOMDB - Db of mutations causing tetrahydrobio
pterin deficiencies BLMbase - Human BLM mutation db (Bloom snyd
rom)
人类基因突变及疾病相关数据库 BTKbase - Human BTK mutation db (X-linked a
gammaglobulinemia) CD40Lbase - Human CD40 ligand mutation db COL1/3 mutation - Human Type I and III collag
en mutation db CFTR mutation - Human cystic fibrosis mutatio
n db (CFTR) EMD db - Human Emerin (EMD) mutation db
(Emery-Dreifuss muscular dystrophy) KMeyeDB - Eye disease genes db
人类基因突变及疾病相关数据库 FVII mutation - Human Factor VII mutation db HAMSTeRS - Human Factor VIII mutation db
(Haemophilia A) HAeMB - Human Factor IX mutation db (Haem
ophilia B) FBN1 mutation - Human fibrillin 1 mutation db
(Marfan syndrome) G6PD - Human G6PD deficiency resource Galt mutation - Human galactose-1-phosphate
uridylyltransferase mutation db (Galactosemia)
人类基因突变及疾病相关数据库 HEXAdb - Human Hexosaminidase A mutation d
b (Tay-sachs disease) IL2RGbase - Human IL2RG (Interleukin-2 recept
or gamma) mutation db (X-SCID) L1CAM mutation - Human L1CAM mutation db LDLR mutation - Human LDLR mutation db (Fa
milial hypercholesterolemia) LQTSdb - Long QT syndrome db NCF1base - Human NCF1 mutation db NCF2base - Human NCF2 mutation db
人类基因突变及疾病相关数据库 Neuromuscular diseases web site NCL - Neuronal Ceroid Lipofuscinoses mutation db OTCase - Human ornithine transcarbamylase (OTC
ase) website Cytochrome P450 alleles nomenclature p53 mutation db - University of Tokyo p53 mutation
db Germline p53 mutation db - University of Prague db
of germline p53 mutations PAHdb - Human phenylalanine hydroxylase (PAH)
mutation db
人类基因突变及疾病相关数据库 PAX6 mutation - Human PAX6 mutation db Prion - Prion and prion disease web site RAG1base - Human RAG1 mutation db RAG2base - Human RAG2 mutation db RB1base - Human retinoblastoma-associated p
rotein (RB) mutation db RetNet - Retinal Information Network Retina International Scientific Newsletter - Infor
mation on Retinal genes, proteins and diseases
人类基因突变及疾病相关数据库
TSC - TSC (TSC1/TSC2) variation db TSC2 - Cardiff-Rotterdam Tuberous Sclerosis (TS)
db (Tuberin; TSC2) TGDB - Tumor gene db VMD2 mutation - Human VMD2 mutation db vWF mutation - Human von Willebrand factor (vW
F) mutation db WRN - Human WRN mutation db (Warner disease) WT1 mutation - Human WT1 mutation db X-ALD mutation - Human ABCD1 mutation db
进化相关数据库及资源 Clusters of Orthologous Groups (COG) - Ph
ylogenetic classification of proteins from 21 complete genomes
XREFdb - Cross-referencing of model organism genetics with mammalian phenotypes
TreeBASE - Relational db of phylogenetic information
The Tree of life - Collection of WWW pages on phylogeny and biodiversity of organisms
专利数据库 DPD - DNA Patent db Ag Patents - Agricultural Biotechnology patents fr
om the USDA USPTO patent db - USA Patent and Trademark
Office patent db Esp@cenet - Patent information database from t
he European Patent Office (worldwide coverage) The Delphion Intellectual Property Network (IPN)
for searching, viewing, and analyzing patent documents.
资源目录服务器或网页
BioCatalog - The BioCatalog at EBI Yellow BAGI - Bio Access Guide to the Inter
net at Houston University Software library from Genamics.com DBCAT - Databases catalog at INFOBIOGE
N MBDL - Molecular Biology Database List Amos' WWW links page Nucleic Acids Research database issue
Human CEPH-genotype database CEPH home page - a research laboratory whic
h constructs maps of the human genome GeneMap'99 - A Gene Map of the Human Gen
ome (NCBI) OMIM - Online Mendelian Inheritance in Man GENATLAS - Human genes atlas GeneClinics - Medical genetics knowledge bas
e GDB - Human genes and genomic maps GeneCards - Db integrating information on hum
an genes
Human UDB - Unified db for Human genome mapping Ensembl - Human genome annotations site UCSC human genome working draft TIGR HGI - TIGR Human Gene Index Human BAC Ends Database - Non-redundant hu
man BAC end sequences Hs UniGene - Human transcripts in GenBank (ES
T clusters) STACK - Sequence Tag Alignment and Consensu
s Knowledgebase (Db of consensus human ESTs)
Human Allgenes.org - Human predicted gene index/c
atalog GenLink - Human genetics resource GENOTK - Human cDNA db HUGE - Human Unidentified Gene-Encoded l
arge proteins cDNA (KIAA...) CGAP - Cancer Genome Anatomy Project SCDb - Stem cell db
Human HuGeMap - Human genome genetic a
nd physical map data G3-RH - Stanford G3 and TNG radiati
on hybrid maps GB4-RH - Genebridge4 (GB4) human
radiation hybrid maps Radiation Hybrid Database - Radiation
hybrid map data
Human chromosome 1~8
Chr1 - Human chromosome 1 at Rockefeller University [Mirror at EBI]
Chr3 - Human chromosome 3 db at the University of Texas Health Science Center
Chr7 - Human chromosome 7 db at Ontario's Hospital for Sick Children
Chr8 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 8
Human chromosome9~11
Chr9 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 9
Chr9 - Human chromosome 9 db Chr10 SWISS-PROT list - Links to SWISS-PROT
entries from human chromosome 10 GTC Chr10 data - Human chromosome 10 data
from Genome Therapeutics Corporation Chr11 SWISS-PROT list - Links to SWISS-PROT
entries from human chromosome 11 11DB - Human chromosome 11 db at Imperial
College (U.K.)
Human chromosome12~16
Chr12 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 12
Chr13 - Human chromosome 13 db at Columbia Chr14 SWISS-PROT list - Links to SWISS-PROT
entries from human chromosome 14 Chr15 SWISS-PROT list - Links to SWISS-PROT
entries from human chromosome 15 Chr15 UBC - Human chromosome 15 WWW
page at UBC Chr16 SWISS-PROT list - Links to SWISS-PROT
entries from human chromosome 16
Human chromosome16~19
Chr16 LANL - Human chromosome 16 db at Los Alamos National Laboratory
Chr16 TIGR - Human chromosome 16 db at TIGR Chr17 SWISS-PROT list - Links to SWISS-PROT
entries from human chromosome 17 Chr18 SWISS-PROT list - Links to SWISS-PROT
entries from human chromosome 18 Chr18 - Human chromosome 18 at Boston
Children's Hospital Chr19 SWISS-PROT list - Links to SWISS-PROT
entries from human chromosome 19
Human chromosome20~22
Chr20 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 20
Chr21 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 21
Chr21 at RIKEN - Human chromosome 21 genome site at RIKEN (Japan)
Chr21 at ERI - Human chromosome 21 genomic sequence db from the Eleanor Roosevelt Institute
Chr22 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 22
Chr22 at Sanger - Sanger Center chromosome 22 project Chr22 at HGC - Human genome center for chromosome 22
Human chromosomeX~Y ChrX SWISS-PROT list - Links to SWISS-P
ROT entries from human chromosome X IXDB - Integrated X chromosome db ChrY SWISS-PROT list - Links to SWISS-P
ROT entries from human chromosome Y DRESH - Human cDNA clones homologous
to Drosophila mutant genes
Vertebrates OMIA - Online Mendelian Inheritance in Animals MGI - Mouse Genome Informatics (includes Mouse
Genome Database (MGD))[Mirrors in Australia | UK | Japan]
TIGR MGI - TIGR Mouse Gene Index Mm UniGene - Mouse transcripts in GenBank (EST
clusters) RatMAP - Rat genome db TIGR RGI - TIGR Rat Gene Index Rn Unigene - Rat transcripts in GenBank (EST clus
ters)
Vertebrates BovBASE - Bovine genome db (in UK) BOVMAP - Bovine genome db (in France) Ark-Cat - Cat genome db HorseBASE - Horse genome db DGP - Dog Genome Project PiGBASE - Pig genome db SheepBASE - Sheep genome db (also known as
SheepMap) [Mirror in UK] MIS - Mendelian Inheritance in Sheep ChickGBASE - Chicken genome db
Vertebrates Fugu - HGMP Resource Centre Fugu Projec
t (Fugu rubripes) Medakafish - Mekada fish (Oryzias latipes) s
erver Ark-Tilapia - Tilapia mossambica genome d
b The fish net - Zebrafish server FishBase - Global information system on fis
hes
Mitochondrion and chloroplast
GOBASE - Organelle Genome Database MitoDat - Mendelian Inheritance and the Mitocho
ndrion db (mitochondrial nuclear genes) MITOMAP - Human mitochondrial genome db MmtDB - Metazoa mitochondrial DNA variants db MitBASE - Integrated mitochondrial DNA db MitBASE-Pilot - Db of S.cerevisiae nuclear genes
involved in mitochondrial biogenesis HvrBase - Primates mtDNA control region seque
nces compilation
Mitochondrion and chloroplast
MOUSE - Mitochondrial and Other Useful SEquences (human and apes mit. DNA db)
MITOP - Mitochondrial proteins, genes and diseases
AMmtDB - Metazoan mitochondrial DNA sequences
Insects Drosophila SWISS-PROT list - Links to Drosop
hila SWISS-PROT entries FlyBase - Drosophila genetic and molecular db
[Mirror at EBI] FlyView - Drosophila image db GIFTS - Gene Interactions in the Fly Trans-Wor
ld Server FlyNets - Db of molecular interactions in Droso
phila melanogaster SOS-DGBD - Db of Drosophila DNA sequence
s annotated with regulatory binding sites Mosquito Genomics
Invertebrates WormBase - C.elegans db [Mirror at Sanger] C.elegans WWW server - at University of Texas S
outhwestern ACeDb - Caenorhabditis elegans db C.elegans Mitochondrial Directory - Data on C.ele
gans genes for mitochondrial proteins C.elegans EST - C.elegans EST db from Japan (Y
uji Kohara's group) C.elegans SWISS-PROT list - Links to C.elegans
SWISS-PROT entries WormPep - C.elegans proteins db WormPD - C.elegans protein db
Invertebrates Dictystelium Genome Sequencing project at BCM Dictyostelium discoideum genome project at IENA DictyDb - Dictyostelium discoideum db Dicty_cDB - Dictyostelium discoideum cDNA proje
ct Cone shells Web site Parasite genomes db and resources Parasite genomes WWW site PlasmoDB - P.falciparum genome db
Invertebrates Malaria - WHO - Malaria db (from WH
O) P.falciparum Sanger - P.falciparum ge
nome project at Sanger PFDB - Plasmodium falciparum Geno
me db P.falciparum - Plasmodium falciparum
Gene Sequence Tag project
Invertebrates MAD - Malaria Antigen db Malaria parasite metabolic pathways
LGN - Leishmania Genome Network Trypanosoma brucei genome project Trypanosoma cruzi genome project kDNA - Kinetoplast Minicircle Sequenc
e db
Plants
NAL - AGIS - Access to many plant genome databases at the National Agricultural Library
Demeter's genomes - Access to many plant genome databases at the USDA-ARS
Mendel - Plant gene nomenclature database from CPGN
AtDB - Arabidopsis thaliana genome database TAIR - The Arabidopsis Information Resource MATDB - MIPS Arabidopsis thaliana db TIGR AtGI - TIGR Arabidopsis thaliana Gene Index AGR - Arabidopsis Genome Resource
Plants BeanGenes - Beans genome db BeanRef - Beans genome db and other resources ChlamyDB - Chlamydomonas reinhardtii genome
db CropNet - Genome mapping in crop plants CottonDB - Cotton genome db MaizeDb - Maize genome db INRA Maize - INRA Maize genome db ZmDB - Maize genome database Pisum sativum (pea) web site
Plants-Rice RGP - Rice Genome Research Program RiceGenes Rice-research.org - Monsanto rice genome
site TIGR OsGI - TIGR Rice Gene Index TIGR GmGI - TIGR Soybean Gene Index Snapdragon (A.majus) web site SorghumDB - Sorghum genome db SoyBase - Soybean genome db
Plants SoyBase metabolic db - Metabolic sub
set of the soybean genome db TIGR LeGI - TIGR Tomato Gene Index Dendrome - Forest trees genome db
Fungi FGSC - Fungal Genetics Stock Center FGR - Fungal Genome Resource Yeast SWISS-PROT list - Links to S.cerevisiae WW
W sites and to SWISS-PROT entries SGD - Saccharomyces genome db YPD - Yeast protein db MitBASE-Pilot - Db of S.cerevisiae nuclear genes in
volved in mitochondrial biogenesis Yeast snoRNA - Yeast small nucleolar RNAs db YTPdb - Yeast Transport Protein db PathCalling - Yeast protein-protein interaction db
Fungi Aspergillus web site C.albicans SWISS-PROT list - Links to C.albicans
WWW sites and to SWISS-PROT entries Candida albicans - Candida albicans server at the
Univ. of Minnesota NGP - Neurospora crassa genome project PC - Pneumocystis carinii genome project S.pombe SWISS-PROT list - Links to S.pombe WW
W sites and to SWISS-PROT entries S.pombe NIH - Fission yeast (S.pombe) server at th
e NIH
Fungi Phycomyces Web site - Resource site
for scientists working on Phycomyces EMGlib - Completely sequenced bacte
rial genomes and the yeast genome
Bacteria ICB - Identification and Classification of Bacteria
WDCM - World Data Center for Microorganisms List of Bacterial Names with Standing in Nomen
clature
MDB - TIGR Microbial db < A>- Genome information broker for Microbial
genomes HOBACGEN - Homologous Bacterial Genes db Comparison of the transport capabilities of bact
erial genomes - from Ian Paulsen
BPGD - Bacterial polysaccharide gene db
Bacteria Bacterial quorum sensing MicrobeWorld - Educational site on microbes E.coli SWISS-PROT list - Links to E.coli WWW site
s and to SWISS-PROT entries EcoWeb / EcoGene - Very comprehensive E.coli d
b ECCE - E.coli Cell Envelope Protein Data Collectio
n ECDC - E.coli db collection EcoCyc - Encyclopedia of E.coli genes and metabo
lism
Bacteria GenProtEC - E.coli genome and proteome db Colibri - E.coli genome db from Pasteur Insitute ECGC - E.coli Genome Center at Wisconsin Uni
versity DDBJ E.coli - E.coli home page at DDBJ B.subtilis SWISS-PROT list - Links to B.subtilis
WWW sites and to SWISS-PROT entries SubtiList - Bacillus subtilis genomic db NRSub - Bacillus subtilis non-redundant db [Mirr
or in Japan]
Bacteria Micado - Microbial advanced db (B.subtilis + E.col
i) (previously known as MadBase) BSORF - Japanese server on B.subtilis A.actinomycetemcomitans - Actinobacillus actino
mycetemcomitans strain HK1651 genome project B.stearothermophilus - Bacillus stearothermophilu
s strain 10 genome project B.pertussis - Bordetella pertussis genome WWW
site BbDB - TIGR Borrelia burgdorferi genome db
Bacteria iBGD - Integrated Buchnera genome db B.cepacia - Burkholderia cepacia genome project Chlamydia - Chlamydia pneumoniae and trachom
atis C.muridarum - TIGR Chlamydia muridarum strain
MoPn genome db C.pneumoniae AR39 - TIGR Chlamydia pneumon
iae strain AR39 genome db C.pneumoniae J138 - Japanese Chlamydia pneu
moniae strain J138 genome db
Bacteria C.acetobutylicum - GTC Clostridium acetobutylicum
strain ATCC 824 data C.jejuni - Campylobacter jejuni strain NCTC 11168
genome WWW site C.hutchinsonii - Cytophaga hutchinsonii genome pr
oject DrDB - TIGR Deinococcus radiodurans strain R1 ge
nome db D.hafniense - Desulfitobacterium hafniense genome
project E.faecium - Enterococcus faecium genome project
Bacteria F.acidarmanus - Ferroplasma acidarmanus gen
ome project F.tularensis - Francisella tularensis genome W
WW site H.influenzae SWISS-PROT list - Links to H.influ
enzae WWW sites and to SWISS-PROT entries HiDB - TIGR H.influenzae genome db HIDC - H.influenzae db collection H.pylori SWISS-PROT list - Links to H.pylori W
WW sites and to SWISS-PROT entries
Bacteria HpDB - TIGR Helicobacter pylori strain 26695 genome db H.pylori J99 - Astra Helicobacter pylori strain J99 genome db PyloriGene - Helicobacter pylori genmoic db MC-1 - Magnetococcus MC-1 genome project M.magnetotacticum - Magnetospirillum magnetotacticum genome p
roject MycDB - Mycobacterium db M.leprae at GTC - GTC Mycobacterium leprae data M.leprae at Sanger - Sanger Centre M.leprae genome project TubercuList - Mycobacterium tuberculosis strain H37Rv genome db MtDB - TIGR Mycobacterium tuberculosis strain Oshkosh genome
db M.tuberculosis at GTC - GTC Mycobacterium tuberculosis data
Bacteria M.tuberculosis at Sanger - Sanger Centre M.tu
berculosis H37Rv genome project M.tuberculosis secreted proteins M.tuberculosis structural genomics consortium M.genitalium SWISS-PROT list - Links to M.ge
nitalium SWISS-PROT entries MgDB - TIGR Mycoplasma genitalium genome
db M.pneumoniae - Mycoplasma pneumoniae gen
ome project
Bacteria N.meningitidis A - Sanger Centre Neisseria meni
ngitidis serogroup A strain Z2491 genome project
N.meningitidis B - TIGR Neisseria meningitidis serogroup B strain MC58 genome db
N.gonorrhoeae - Neisseria gonorrhoeae strain FA 1090 genome project
N.europaea - Nitrosomonas europaea genome project
N.punctiforme - Nostoc punctiforme genome project
Bacteria P.marinus - Prochlorococcus marinus genome project P.aeruginosa project - Pseudomonas aeruginosa genome
project P.aeruginosa db - Pseudomonas aeruginosa genome db P.fluorescens - Pseudomonas fluorescens genome project Rhizobium pNGR234a SWISS-PROT list - Links to Rhizob
ium plasmid pNGR234a SWISS-PROT entries Rhizobium pNGR234a analysis RsGDB - Rhodobacter sphaeroides genome db R.sphaeroides - Rhodobacter sphaeroides genome project
Bacteria R.palustris - Rhodopseudomonas palustris genom
e project R.prowazekii SWISS-PROT list - Links to prowaze
kii SWISS-PROT entries R.prowazekii - Rickettsia prowazekii strain Madrid
E genome project S.typhimurium SWISS-PROT list - Links to S.typhi
murium SWISS-PROT entries RhizoBase - Sinorhizobium loti genome project S.meliloti - Sinorhizobium meliloti genome project
Bacteria S.aromaticivorans - Sphingomonas aromaticivora
ns genome project S.aureus - Staphylococcus aureus strain NCTC 8
325 genome project S.mutans - Streptococcus mutans strain UAB159
genome project S.pyogenes - Streptococcus pyogenes strain M1
genome project PCC 6803 SWISS-PROT list - Links to Synechoc
ystis PCC 6803 SWISS-PROT entries CyanoBase - Synechocystis PCC 6803 db
Bacteria Synechococcus - Marine synechococcus genome proj
ect T.fusca - Thermomonospora fusca genome project TmDB - TIGR Thermotoga maritima genome db TpDB - TIGR Treponema pallidum genome db T.erythraeum - Trichodesmium erythraeum genome p
roject U.urealyticum - Ureaplasma urealyticum genome WW
W site VcDB - TIGR Vibrio cholerae genome db X.citri - Xanthomonas cititi genome WWW site
Bacteria X.fastidiosa - Xylella fastidiosa genome WW
W site X.fastidiosa at DOE - DOE Xylella fastidiosa
genome project Y.pestis - Yersinia pestis genome WWW sit
e Phytophthora Genome Initiative Database -
Oomycete sequences and genetic maps
Archaea A.pernix - Aeropyrum pernix K1 genome db AfDB - TIGR Archaeoglobus fulgidus genome db Halobacterium NRC-1 - Halobacterium strain NR
C-1 genome project M.thermoautotrophicum - Methanobacterium the
rmoautotrophicum genome db M.jannaschii SWISS-PROT list - Links to M.jann
aschii SWISS-PROT entries MjDB - TIGR Methanococcus jannaschii genome
db MjFdb - Methanococcus jannaschii functions db
Archaea M.barkeri - Methanosarcina barkeri genome
project P.abyssi - Pyrococcus abyssi genome proje
ct and db P.horikoshii - Pyrococcus horikoshii OT3 db SGP - Sulfolobus solfataricus strain P2 gen
ome project T.acidophilum - Thermoplasma acidophilum
genome project
Viruses All the virology on the WWW - links to virology WW
W servers by David M. Sander ICTVdB - Universal virus taxonomy db AVIS - Animal Virus Information System Plants Viruses Online - Information on plant viruses HIV - HIV and related species db HPV - Human papillomaviruses db Influenza sequence db Picornavirus - Picornavirus home page and access
to db Tobamoviruses